PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0018s0830.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 930aa    MW: 104139 Da    PI: 7.1236
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0018s0830.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK87.79.6e-28619668352
                  RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             ++isle+l++yF++++kdAA++L vc+T+LKriCRq+GI RWP+Rkik++
  SapurV1A.0018s0830.1.p 619 QTISLEVLRQYFAGSLKDAAQSLSVCPTTLKRICRQHGITRWPSRKIKKV 668
                             78**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.53604688IPR003035RWP-RK domain
PfamPF020424.0E-25620668IPR003035RWP-RK domain
SuperFamilySSF542774.25E-18832920No hitNo description
SMARTSM006664.2E-13836919IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2407.2E-19836916No hitNo description
PROSITE profilePS5174517.907836919IPR000270PB1 domain
PfamPF005641.8E-12837916IPR000270PB1 domain
CDDcd064078.98E-30837916No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MDEHSSSSPN STLGIFSGNS MNWELMDEIL YQGWAENDGE FSFLQQVPST NNLLYDHPSL  60
YVPFMGSNNL SAATNQQDYY QEEIERHCHG NPPLDYPKSM ELVQTESQVE DSVVTSSSVL  120
HSSGYRVEAA GLGVEWQMAP RVIPMTSFSV KERAMQVVRY LQKFIEYKDS LIQIWLPMEK  180
EGKTVLATID QPYFVNLSCK SLASYRNVST AYHFQVEQDA RLSVGFPGRV FLEKLPEWTP  240
DVSLFRSEEY PRRDHAVQHN IKGSLALPFF NQGSETCLGI VEIVTTTLKI SYRQELEDIC  300
RALKAFNLRT SEDFCSPGAK TFNGLNQVAV PEISEIVQSV CKAYRLPLAL TWALSGRQGK  360
SGRQQFSEKS GACISTVDSA CFLADRDFSG FHAASFEQYL FLGQGIVGRA FAAKKQCLAN  420
DITSFSKKDY PLAHHATIFG LHGAMAIPLR SISTGLVEFV LELFLPKDCR DTKEQKRMWD  480
VLPSAIQQVC WSLQVVMDRE QLDNGENQSF GSSPSKQPPL DESSWISRMV ESHKKSKSFC  540
VTWGYPKEPK EEFKMITHWD DSVAELDHKQ VISELGKLHQ NYRPASNTEG DGVSSAYGRR  600
LSFSSRKTGK KRRTKTDIQT ISLEVLRQYF AGSLKDAAQS LSVCPTTLKR ICRQHGITRW  660
PSRKIKKVDH SLRKLQQVID TVQGAKGSIQ IESFYSAFPE LSCTKLSSHA PSSSFRRSDN  720
SKHSDSPPDD TIISGTASKS HSSPCSRSSC SSNCCSARAQ QHVNGNGALL AETSNGVLKR  780
TCSSELAELY SLNNEGEPDF LSRSHAHNTG TISEQIHQSV LETPTQFGQS LRGGGVFRVK  840
ALFGEEKVTF FLQPNWGLRN LQQEVGKRFQ IDDFTGIGLK YMDGDGEWIR LTCDGDLEYC  900
KETHRFCQSN TIKISLYKYS SAFVCQESC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1609614KKRRTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0018s0830.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322654.20.0protein NLP2
TrEMBLB9IHW60.0B9IHW6_POPTR; Uncharacterized protein
STRINGPOPTR_0016s04220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein