PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0018s0530.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 277aa    MW: 31060.8 Da    PI: 9.4498
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0018s0530.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.5e-32195249155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             k+r+rWt++LH++Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  SapurV1A.0018s0530.4.p 195 KKRIRWTQNLHRKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVKSHLQKYRS 249
                             78****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.415192252IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-28193250IPR009057Homeodomain-like
SuperFamilySSF466898.96E-17193249IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23195250IPR006447Myb domain, plants
PfamPF002492.0E-7199248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASRWKPAVV EAGCQQKNIS LEGKPDSIMS RFESPAPAFY PTERYMRFPQ YDCQAGNYFC  60
SQYSKSHDSH QFSGENYINS GEQADLSFGS RSTLESVVRP QFSYYKSFDK SDKGISSSSE  120
QHNKLLDNPG VSIANHFSVP FQGNQNRQVD CNPYNSSSAG LGCFNSREEQ RSPRFSLGVF  180
PISSGKDLSP TLSSKKRIRW TQNLHRKFVE CVNRLGGAEK ATPKAILKLM DSDGLTIFHV  240
KSHLQKYRSA KYIPDSSEGK PLFFLTSLCQ RVLITN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-23195252158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-23195252158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-23195252158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-23195252158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0018s0530.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322672.11e-154myb family transcription factor PHL5 isoform X2
RefseqXP_024443167.11e-154myb family transcription factor PHL5 isoform X1
TrEMBLB9II051e-153B9II05_POPTR; Uncharacterized protein
STRINGPOPTR_0016s04830.11e-153(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.25e-39G2-like family protein