PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0018s0530.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 371aa MW: 41778.5 Da PI: 8.3496 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.6 | 1e-31 | 195 | 249 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ SapurV1A.0018s0530.2.p 195 KKRIRWTQNLHRKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVKSHLQKYRS 249 78****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.415 | 192 | 252 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-28 | 193 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-16 | 193 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-23 | 195 | 250 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-7 | 199 | 248 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.4E-20 | 280 | 326 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MASRWKPAVV EAGCQQKNIS LEGKPDSIMS RFESPAPAFY PTERYMRFPQ YDCQAGNYFC 60 SQYSKSHDSH QFSGENYINS GEQADLSFGS RSTLESVVRP QFSYYKSFDK SDKGISSSSE 120 QHNKLLDNPG VSIANHFSVP FQGNQNRQVD CNPYNSSSAG LGCFNSREEQ RSPRFSLGVF 180 PISSGKDLSP TLSSKKRIRW TQNLHRKFVE CVNRLGGAEK ATPKAILKLM DSDGLTIFHV 240 KSHLQKYRSA KYIPDSSEGK AEKRTSTDDV SQLDVKTGSR IREALEVQID VQRRLHEQLE 300 IQENLQLRIE EQGKQLKMMF EQQQKTANSL LNNQNLNITS LDESTFSLEG IDISIVEGSN 360 NNTHFPSKIS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-22 | 195 | 252 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-22 | 195 | 252 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-22 | 195 | 252 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-22 | 195 | 252 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0018s0530.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322672.1 | 0.0 | myb family transcription factor PHL5 isoform X2 | ||||
Swissprot | Q0WVU3 | 1e-73 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | B9II05 | 0.0 | B9II05_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s04830.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 5e-76 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0018s0530.2.p |