PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0018s0530.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 372aa MW: 41865.6 Da PI: 8.3496 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.6 | 1e-31 | 195 | 249 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ SapurV1A.0018s0530.1.p 195 KKRIRWTQNLHRKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVKSHLQKYRS 249 78****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.415 | 192 | 252 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-28 | 193 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-16 | 193 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-23 | 195 | 250 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-7 | 199 | 248 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.4E-20 | 281 | 327 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MASRWKPAVV EAGCQQKNIS LEGKPDSIMS RFESPAPAFY PTERYMRFPQ YDCQAGNYFC 60 SQYSKSHDSH QFSGENYINS GEQADLSFGS RSTLESVVRP QFSYYKSFDK SDKGISSSSE 120 QHNKLLDNPG VSIANHFSVP FQGNQNRQVD CNPYNSSSAG LGCFNSREEQ RSPRFSLGVF 180 PISSGKDLSP TLSSKKRIRW TQNLHRKFVE CVNRLGGAEK ATPKAILKLM DSDGLTIFHV 240 KSHLQKYRSA KYIPDSSEGK AEKRTSTDDV SQLDVKTSGS RIREALEVQI DVQRRLHEQL 300 EIQENLQLRI EEQGKQLKMM FEQQQKTANS LLNNQNLNIT SLDESTFSLE GIDISIVEGS 360 NNNTHFPSKI S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-22 | 195 | 252 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-22 | 195 | 252 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-22 | 195 | 252 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-22 | 195 | 252 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-22 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0018s0530.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443167.1 | 0.0 | myb family transcription factor PHL5 isoform X1 | ||||
Swissprot | Q0WVU3 | 6e-72 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | B9II05 | 0.0 | B9II05_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s04830.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 3e-74 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0018s0530.1.p |