PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0018s0470.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 277aa    MW: 29670 Da    PI: 9.1068
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0018s0470.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP271.2e-0836545876
                            S--S-STTTT-------S- CS
                     SBP 58 ekrsCrrrLakhnerrrkk 76
                            +krsCrrrLa+hnerrrk+
  SapurV1A.0018s0470.4.p 36 GKRSCRRRLAGHNERRRKP 54
                            7****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1036128.24E-63657IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLRLTIQGTR FAVCIPSLLE LLLLVWCKDF ASNVAGKRSC RRRLAGHNER RRKPPSGSVL  60
STRHGRFSPS LFVADNSSRD GGLLVDFSAY PRHTGRDGWP AGRSSGLVTG NETAATGRSV  120
SHPWQISSQN PPSNLCMQGS TGGTGLFSAG IPPGECFTGV AVSDSSCALS LLSNQPWGST  180
NRASSLAVND LLSAEETPVA QSTAHHGAAV NHYANPWSFK NNEGSNSSHD LGQISLPLGS  240
QLPGHLELSQ QNRRQYMDLV HSRAYDSSTQ HIHWSL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0018s0470.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322678.31e-148squamosa promoter-binding-like protein 9
TrEMBLA0A2K1XAV41e-147A0A2K1XAV4_POPTR; Uncharacterized protein
STRINGPOPTR_0016s04890.11e-148(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-31squamosa promoter binding protein-like 9