PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0018s0470.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 366aa    MW: 38857.9 Da    PI: 9.3207
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0018s0470.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP76.83.5e-2481143176
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                             +CqvegC++dls+ak+y++rhkvC++hsk+p v+v+gl qrfCqqCs             sCrrrLa+hnerrrk+
  SapurV1A.0018s0470.3.p  81 RCQVEGCKVDLSDAKTYYSRHKVCSMHSKSPRVIVAGLVQRFCQQCS-------------SCRRRLAGHNERRRKP 143
                             6*********************************************9.............9*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.2E-2373128IPR004333Transcription factor, SBP-box
PROSITE profilePS5114122.86379143IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-2980146IPR004333Transcription factor, SBP-box
PfamPF031109.1E-1782142IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNTRHLLMEM DSSSLSESAT SNATSPPAES VNGLKFGKKI YFEDHGGVGA PAKRGTGSSS  60
SGSGSGSSRK AQGGQHQQPP RCQVEGCKVD LSDAKTYYSR HKVCSMHSKS PRVIVAGLVQ  120
RFCQQCSSCR RRLAGHNERR RKPPSGSVLS TRHGRFSPSL FVADNSSRDG GLLVDFSAYP  180
RHTGRDGWPA GRSSGLVTGN ETAATGRSVS HPWQISSQNP PSNLCMQGST GGTGLFSAGI  240
PPGECFTGVA VSDSSCALSL LSNQPWGSTN RASSLAVNDL LSAEETPVAQ STAHHGAAVN  300
HYANPWSFKN NEGSNSSHDL GQISLPLGSQ LPGHLELSQQ NRRQYMDLVH SRAYDSSTQH  360
IHWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-20821421184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0018s0470.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322678.30.0squamosa promoter-binding-like protein 9
TrEMBLA0A2K1XAV40.0A0A2K1XAV4_POPTR; Uncharacterized protein
STRINGPOPTR_0016s04890.11e-147(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-46squamosa promoter binding protein-like 9