PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0018s0230.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 26745 Da PI: 8.9905 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.4 | 5.2e-08 | 192 | 218 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN+++ L+el+P + SapurV1A.0018s0230.5.p 192 SHSLAERARREKINQRMKLLQELVPGC 218 8************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.15E-8 | 186 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.38E-5 | 186 | 229 | No hit | No description |
PROSITE profile | PS50888 | 10.785 | 188 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-8 | 191 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-5 | 192 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDLLTGTVAR SGPELDETGL DSLQFDEDIR HLITAPSENA NSFIALLELP ANQAVELLHS 60 DSGKKECPNV TFPSNTSLLE RAARFSVLNG GSNSTDSSSV PSDSSSKNLE KAAPVKSEPL 120 ETESYLDSSQ PLVSDPTVGN SAPNARACSK RKERGKKVKG ASKKRKNEVS KQEEEKLPYV 180 HVRARRGQAT DSHSLAERAR REKINQRMKL LQELVPGCNK HWFWMKLSTM CSSCNAKWRS 240 YQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 165 | KRKERGKKVKGASKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0018s0230.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322692.3 | 1e-122 | transcription factor bHLH48 | ||||
Refseq | XP_011033280.1 | 1e-122 | PREDICTED: transcription factor bHLH48-like | ||||
Swissprot | Q3EAI1 | 3e-54 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A2K1XAZ2 | 1e-120 | A0A2K1XAZ2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s05150.1 | 1e-123 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 1e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0018s0230.5.p |
Publications ? help Back to Top | |||
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