PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0017s0490.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 256aa MW: 28286.6 Da PI: 9.5754

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0017s0490.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.8	9.3e-32	50	103	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++F++av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ SapurV1A.0017s0490.2.p 50 PRMRWTTTLHAHFIHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 103 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.87E-15	48	104	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-28	48	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	50	103	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	51	102	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MTDLSSPSLQ LPRNLDHQYN HDHHHPQIYG HDFKTSARII RGVKRSARAP RMRWTTTLHA 60 HFIHAVQLLG GHERATPKSV LELMNVKDLT LAHVKSHLQM YRTVKSTDKG SVSGQTDQRA 120 TILEVDAAGL SGEKTGASNP SDSLNNPPPP PPPPPLSSIQ KNQRNSRSLS MAGDEKNRSS 180 LYSLTYSDFT AHDQSKEVGQ KATLNMAANL KERLDSSSLS SSDTLLNLEF TLGRPSWHLD 240 YAESSNDHQL TLLKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0017s0490.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002301209.3	1e-120	probable transcription factor KAN4 isoform X3
TrEMBL	A0A2K2BI44	1e-117	A0A2K2BI44_POPTR; Uncharacterized protein
STRING	XP_002510296.1	2e-94	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	4e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0017s0490.2.p