PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0016s0590.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WOX | ||||||||
Protein Properties | Length: 192aa MW: 21968.8 Da PI: 5.828 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.2 | 9.1e-21 | 52 | 112 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le+ Fe+ n +p ++++++++++l +++e++V++WFqNrRa+ k+ SapurV1A.0016s0590.3.p 52 RQRWTPKPAQLQILEQIFEQcNATPGRQKIKDITRELaqhgQISETNVYNWFQNRRARSKR 112 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 96 | 3.1e-31 | 51 | 114 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+p Q++iLe+++++ tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq SapurV1A.0016s0590.3.p 51 SRQRWTPKPAQLQILEQIFEQCNATPGRQKIKDITRELAQHGQISETNVYNWFQNRRARSKRKQ 114 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 47 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.72E-18 | 47 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.738 | 48 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-13 | 50 | 117 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-18 | 52 | 112 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.59E-14 | 52 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MMNCPINLFG SVRFTWFCGG NCLCFVFDLG MRLGNPYCDP LLSSAVHKIG SRQRWTPKPA 60 QLQILEQIFE QCNATPGRQK IKDITRELAQ HGQISETNVY NWFQNRRARS KRKQSAVVPN 120 NGESEMETEN ESFREKKTRP EDSQPDENTT PLADQMYFNS PDIGFDQLVG KMESPGSCIP 180 YWQMEQYDLL G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 113 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0016s0590.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY479970 | 0.0 | AY479970.1 Populus tomentosa homeodomain protein HB3 pseudogene mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301917.1 | 1e-111 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 2e-44 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | B9GQ01 | 1e-110 | B9GQ01_POPTR; WOX family protein | ||||
STRING | POPTR_0002s00980.1 | 1e-110 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-44 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0016s0590.3.p |
Publications ? help Back to Top | |||
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