PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0016s0590.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

WOX

Protein Properties

Length: 216aa MW: 24610.6 Da PI: 4.8697

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0016s0590.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.9	1.2e-20	76	136	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le+ Fe+ n +p ++++++++++l +++e++V++WFqNrRa+ k+ SapurV1A.0016s0590.2.p 76 RQRWTPKPAQLQILEQIFEQcNATPGRQKIKDITRELaqhgQISETNVYNWFQNRRARSKR 136 89***************99************************************97 PP
2	Wus_type_Homeobox	95.7	3.9e-31	75	138	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+p Q++iLe+++++ tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq SapurV1A.0016s0590.2.p 75 SRQRWTPKPAQLQILEQIFEQCNATPGRQKIKDITRELAQHGQISETNVYNWFQNRRARSKRKQ 138 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-17	71	140	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-18	71	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.738	72	137	IPR001356	Homeobox domain
SMART	SM00389	2.6E-13	74	141	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-18	76	136	IPR001356	Homeobox domain
CDD	cd00086	1.70E-13	76	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEEGNFQNGG GLGVKVMTDE QMEMLRKQIA VYATICEQLV EMHKDLSAQQ EFAGMRLGNP 60 YCDPLLSSAV HKIGSRQRWT PKPAQLQILE QIFEQCNATP GRQKIKDITR ELAQHGQISE 120 TNVYNWFQNR RARSKRKQSA VVPNNGESEM ETENESFREK KTRPEDSQPD ENTTPLADQM 180 YFNSPDIGFD QLVGKMESPG SCIPYWQMEQ YDLLG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0016s0590.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ010810	0.0	AJ010810.1 Populus tremula X Populus tremuloides mRNA for homeodomain protein HB1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002301917.1	1e-151	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	2e-69	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	B9GQ01	1e-150	B9GQ01_POPTR; WOX family protein
STRING	POPTR_0002s00980.1	1e-151	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-69	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	SapurV1A.0016s0590.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]