PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0016s0590.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WOX | ||||||||
Protein Properties | Length: 286aa MW: 32660.1 Da PI: 8.1404 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.9e-20 | 76 | 136 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le+ Fe+ n +p ++++++++++l +++e++V++WFqNrRa+ k+ SapurV1A.0016s0590.1.p 76 RQRWTPKPAQLQILEQIFEQcNATPGRQKIKDITRELaqhgQISETNVYNWFQNRRARSKR 136 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 95 | 6.6e-31 | 75 | 138 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+p Q++iLe+++++ tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq SapurV1A.0016s0590.1.p 75 SRQRWTPKPAQLQILEQIFEQCNATPGRQKIKDITRELAQHGQISETNVYNWFQNRRARSKRKQ 138 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-17 | 71 | 140 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.13E-18 | 71 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.738 | 72 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-13 | 74 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.25E-13 | 76 | 138 | No hit | No description |
Pfam | PF00046 | 3.8E-18 | 76 | 136 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MEEGNFQNGG GLGVKVMTDE QMEMLRKQIA VYATICEQLV EMHKDLSAQQ EFAGMRLGNP 60 YCDPLLSSAV HKIGSRQRWT PKPAQLQILE QIFEQCNATP GRQKIKDITR ELAQHGQISE 120 TNVYNWFQNR RARSKRKQSA VVPNNGESEM ETENESFREK KTRPEDSQPD ENTTPLADQM 180 YFNSPDIGTP ICLPSFPHKI HALRVLFHTF NPVSIRPLFL KTRIWSEIKH TSMRSNVLNV 240 TGLCVQDLTS WWGKWNPQGA VFLTGRWSNM TCLDDVPSRP AEMPR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 137 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0016s0590.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ010810 | 0.0 | AJ010810.1 Populus tremula X Populus tremuloides mRNA for homeodomain protein HB1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301917.1 | 1e-127 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 2e-67 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | B9GQ01 | 1e-126 | B9GQ01_POPTR; WOX family protein | ||||
STRING | POPTR_0002s00980.1 | 1e-127 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 3e-66 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0016s0590.1.p |
Publications ? help Back to Top | |||
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