PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0016s0070.6.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SBP

Protein Properties

Length: 967aa MW: 107411 Da PI: 8.041

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0016s0070.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.3	6.8e-41	120	197	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dl++ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ SapurV1A.0016s0070.6.p 120 MCQVDNCKEDLTKAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 197 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.8E-34	115	182	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.966	118	195	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-37	119	199	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-29	121	194	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence Send to blast
MTSMAKKHDL SYQTPNSQLL PQFLQTSRGK NWNPKAWDWD SVGFVAKPSV AAETLRLGTV 60 SREPKKKDEN DSKNKSNSAN EDDDGLGLNL GGSLTSVEEP VSRTNKRVRS GSPGNGSYPM 120 CQVDNCKEDL TKAKDYHRRH KVCEVHSKAT KALVGKQMQR FCQQCSRFHP LSEFDEGKRS 180 CRRRLAGHNR RRRKTQPEDV TSQLLLPGSR DMNNNGNLDI VNLLTALAHS QASAPDAQAI 240 LSQRSSHSSD SEKSKLTGPN QVTGPHLQKR SNVEFPSVGS ERLSRCYESP VEDSDCQIQE 300 SHPNLPLQLF SSSPENESRQ KPASSMKYFS SDSSNPIEDR SPSSSPPVVQ KLFPLQSTAE 360 TMKSEKMPVR REVNANVEGG RSHGGALPLE LFRGLNREPD HGSFQSFPYQ GGYTSSSGSD 420 HSPSSQNSDS QDRTGRIIFK LFDKDPSHFP GTLRTKIYNW LSNSPSEMES YIRPGCVVLS 480 VYLSMPSPSW EQLERNLLQL VDSLVQDSDS DLWRSGRFLL NTGRQLASQK DGRVRLCKSW 540 RTWSSPELIL VSPVAVIGGQ ETSLQLKGRN LTGPGTKIHC TYMGGYTSKE VTDSSSPGSM 600 YDEINVGGFK IHGPSPSILG RCFIEVENGF KGNSFPVIIA DASICKELRL LESEFDEKAE 660 ASNIVSEEQA HDLGRPRSRE EALHFLNELG WLFQRKSVPS MLEAPDYSLN RFKFLLIFSV 720 ERDYCVLVKT ILDMLVERNM CRDELSKESL EMLHEIQLLN RSVKRRCREM ADLLIHYSII 780 GLDNSSRTYI FPPNVGGPGG ITPLHLAACA SGSDGLVDAL TNDPQEIGLS CWNSVLDANG 840 QSPYAYAFMT KNHSCNLLVA RKLSDKRNGQ ISVAIGNEIE QVAMEQEQRT MSQFQRESKS 900 CAKCASVAAK FHGRFPGSRG LLQRPYIHSM LAIAAVCVCV CLFFRGAPDI GLVAPFKWEN 960 LDYGTI*

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence Send to blast

MTSMAKKHDL SYQTPNSQLL PQFLQTSRGK NWNPKAWDWD SVGFVAKPSV AAETLRLGTV  60
SREPKKKDEN DSKNKSNSAN EDDDGLGLNL GGSLTSVEEP VSRTNKRVRS GSPGNGSYPM  120
CQVDNCKEDL TKAKDYHRRH KVCEVHSKAT KALVGKQMQR FCQQCSRFHP LSEFDEGKRS  180
CRRRLAGHNR RRRKTQPEDV TSQLLLPGSR DMNNNGNLDI VNLLTALAHS QASAPDAQAI  240
LSQRSSHSSD SEKSKLTGPN QVTGPHLQKR SNVEFPSVGS ERLSRCYESP VEDSDCQIQE  300
SHPNLPLQLF SSSPENESRQ KPASSMKYFS SDSSNPIEDR SPSSSPPVVQ KLFPLQSTAE  360
TMKSEKMPVR REVNANVEGG RSHGGALPLE LFRGLNREPD HGSFQSFPYQ GGYTSSSGSD  420
HSPSSQNSDS QDRTGRIIFK LFDKDPSHFP GTLRTKIYNW LSNSPSEMES YIRPGCVVLS  480
VYLSMPSPSW EQLERNLLQL VDSLVQDSDS DLWRSGRFLL NTGRQLASQK DGRVRLCKSW  540
RTWSSPELIL VSPVAVIGGQ ETSLQLKGRN LTGPGTKIHC TYMGGYTSKE VTDSSSPGSM  600
YDEINVGGFK IHGPSPSILG RCFIEVENGF KGNSFPVIIA DASICKELRL LESEFDEKAE  660
ASNIVSEEQA HDLGRPRSRE EALHFLNELG WLFQRKSVPS MLEAPDYSLN RFKFLLIFSV  720
ERDYCVLVKT ILDMLVERNM CRDELSKESL EMLHEIQLLN RSVKRRCREM ADLLIHYSII  780
GLDNSSRTYI FPPNVGGPGG ITPLHLAACA SGSDGLVDAL TNDPQEIGLS CWNSVLDANG  840
QSPYAYAFMT KNHSCNLLVA RKLSDKRNGQ ISVAIGNEIE QVAMEQEQRT MSQFQRESKS  900
CAKCASVAAK FHGRFPGSRG LLQRPYIHSM LAIAAVCVCV CLFFRGAPDI GLVAPFKWEN  960
LDYGTI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-32	111	194	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00664	PBM	Transfer from Potri.002G002400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0016s0070.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024450223.1	0.0	squamosa promoter-binding-like protein 14 isoform X2
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2K2BB76	0.0	A0A2K2BB76_POPTR; Uncharacterized protein
STRING	POPTR_0002s00440.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	SapurV1A.0016s0070.6.p

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]