PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0016s0070.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 1049aa MW: 116105 Da PI: 8.095 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.2 | 7.5e-41 | 120 | 197 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dl++ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ SapurV1A.0016s0070.4.p 120 MCQVDNCKEDLTKAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 197 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.3E-34 | 115 | 182 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.966 | 118 | 195 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-37 | 119 | 199 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-29 | 121 | 194 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1049 aa Download sequence Send to blast |
MTSMAKKHDL SYQTPNSQLL PQFLQTSRGK NWNPKAWDWD SVGFVAKPSV AAETLRLGTV 60 SREPKKKDEN DSKNKSNSAN EDDDGLGLNL GGSLTSVEEP VSRTNKRVRS GSPGNGSYPM 120 CQVDNCKEDL TKAKDYHRRH KVCEVHSKAT KALVGKQMQR FCQQCSRFHP LSEFDEGKRS 180 CRRRLAGHNR RRRKTQPEDV TSQLLLPGSR DMNNNGNLDI VNLLTALAHS QGRNDDKSTN 240 CPTVPDKDQL IQILYKINSL PLPMDLAAKL SNIASLNGKN PNQPSLGHQN RLNGTVSSPS 300 TTDLLAVLST TLAASAPDAQ AILSQRSSHS SDSEKSKLTG PNQVTGPHLQ KRSNVEFPSV 360 GSERLSRCYE SPVEDSDCQI QESHPNLPLQ LFSSSPENES RQKPASSMKY FSSDSSNPIE 420 DRSPSSSPPV VQKLFPLQST AETMKSEKMP VRREVNANVE GGRSHGGALP LELFRGLNRE 480 PDHGSFQSFP YQGGYTSSSG SDHSPSSQNS DSQDRTGRII FKLFDKDPSH FPGTLRTKIY 540 NWLSNSPSEM ESYIRPGCVV LSVYLSMPSP SWEQLERNLL QLVDSLVQDS DSDLWRSGRF 600 LLNTGRQLAS QKDGRVRLCK SWRTWSSPEL ILVSPVAVIG GQETSLQLKG RNLTGPGTKI 660 HCTYMGGYTS KEVTDSSSPG SMYDEINVGG FKIHGPSPSI LGRCFIEVEN GFKGNSFPVI 720 IADASICKEL RLLESEFDEK AEASNIVSEE QAHDLGRPRS REEALHFLNE LGWLFQRKSV 780 PSMLEAPDYS LNRFKFLLIF SVERDYCVLV KTILDMLVER NMCRDELSKE SLEMLHEIQL 840 LNRSVKRRCR EMADLLIHYS IIGLDNSSRT YIFPPNVGGP GGITPLHLAA CASGSDGLVD 900 ALTNDPQEIG LSCWNSVLDA NGQSPYAYAF MTKNHSCNLL VARKLSDKRN GQISVAIGNE 960 IEQVAMEQEQ RTMSQFQRES KSCAKCASVA AKFHGRFPGS RGLLQRPYIH SMLAIAAVCV 1020 CVCLFFRGAP DIGLVAPFKW ENLDYGTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-32 | 111 | 194 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00664 | PBM | Transfer from Potri.002G002400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0016s0070.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450222.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A2K2BB79 | 0.0 | A0A2K2BB79_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s00440.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0016s0070.4.p |
Publications ? help Back to Top | |||
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