PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0016s0070.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SBP

Protein Properties

Length: 1049aa MW: 116105 Da PI: 8.095

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0016s0070.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.5e-41	120	197	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dl++ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ SapurV1A.0016s0070.2.p 120 MCQVDNCKEDLTKAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 197 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.3E-34	115	182	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.966	118	195	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.96E-37	119	199	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-29	121	194	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1049 aa Download sequence Send to blast
MTSMAKKHDL SYQTPNSQLL PQFLQTSRGK NWNPKAWDWD SVGFVAKPSV AAETLRLGTV 60 SREPKKKDEN DSKNKSNSAN EDDDGLGLNL GGSLTSVEEP VSRTNKRVRS GSPGNGSYPM 120 CQVDNCKEDL TKAKDYHRRH KVCEVHSKAT KALVGKQMQR FCQQCSRFHP LSEFDEGKRS 180 CRRRLAGHNR RRRKTQPEDV TSQLLLPGSR DMNNNGNLDI VNLLTALAHS QGRNDDKSTN 240 CPTVPDKDQL IQILYKINSL PLPMDLAAKL SNIASLNGKN PNQPSLGHQN RLNGTVSSPS 300 TTDLLAVLST TLAASAPDAQ AILSQRSSHS SDSEKSKLTG PNQVTGPHLQ KRSNVEFPSV 360 GSERLSRCYE SPVEDSDCQI QESHPNLPLQ LFSSSPENES RQKPASSMKY FSSDSSNPIE 420 DRSPSSSPPV VQKLFPLQST AETMKSEKMP VRREVNANVE GGRSHGGALP LELFRGLNRE 480 PDHGSFQSFP YQGGYTSSSG SDHSPSSQNS DSQDRTGRII FKLFDKDPSH FPGTLRTKIY 540 NWLSNSPSEM ESYIRPGCVV LSVYLSMPSP SWEQLERNLL QLVDSLVQDS DSDLWRSGRF 600 LLNTGRQLAS QKDGRVRLCK SWRTWSSPEL ILVSPVAVIG GQETSLQLKG RNLTGPGTKI 660 HCTYMGGYTS KEVTDSSSPG SMYDEINVGG FKIHGPSPSI LGRCFIEVEN GFKGNSFPVI 720 IADASICKEL RLLESEFDEK AEASNIVSEE QAHDLGRPRS REEALHFLNE LGWLFQRKSV 780 PSMLEAPDYS LNRFKFLLIF SVERDYCVLV KTILDMLVER NMCRDELSKE SLEMLHEIQL 840 LNRSVKRRCR EMADLLIHYS IIGLDNSSRT YIFPPNVGGP GGITPLHLAA CASGSDGLVD 900 ALTNDPQEIG LSCWNSVLDA NGQSPYAYAF MTKNHSCNLL VARKLSDKRN GQISVAIGNE 960 IEQVAMEQEQ RTMSQFQRES KSCAKCASVA AKFHGRFPGS RGLLQRPYIH SMLAIAAVCV 1020 CVCLFFRGAP DIGLVAPFKW ENLDYGTI*

Sequence ? help Back to Top

Protein Sequence Length: 1049 aa Download sequence Send to blast

MTSMAKKHDL SYQTPNSQLL PQFLQTSRGK NWNPKAWDWD SVGFVAKPSV AAETLRLGTV  60
SREPKKKDEN DSKNKSNSAN EDDDGLGLNL GGSLTSVEEP VSRTNKRVRS GSPGNGSYPM  120
CQVDNCKEDL TKAKDYHRRH KVCEVHSKAT KALVGKQMQR FCQQCSRFHP LSEFDEGKRS  180
CRRRLAGHNR RRRKTQPEDV TSQLLLPGSR DMNNNGNLDI VNLLTALAHS QGRNDDKSTN  240
CPTVPDKDQL IQILYKINSL PLPMDLAAKL SNIASLNGKN PNQPSLGHQN RLNGTVSSPS  300
TTDLLAVLST TLAASAPDAQ AILSQRSSHS SDSEKSKLTG PNQVTGPHLQ KRSNVEFPSV  360
GSERLSRCYE SPVEDSDCQI QESHPNLPLQ LFSSSPENES RQKPASSMKY FSSDSSNPIE  420
DRSPSSSPPV VQKLFPLQST AETMKSEKMP VRREVNANVE GGRSHGGALP LELFRGLNRE  480
PDHGSFQSFP YQGGYTSSSG SDHSPSSQNS DSQDRTGRII FKLFDKDPSH FPGTLRTKIY  540
NWLSNSPSEM ESYIRPGCVV LSVYLSMPSP SWEQLERNLL QLVDSLVQDS DSDLWRSGRF  600
LLNTGRQLAS QKDGRVRLCK SWRTWSSPEL ILVSPVAVIG GQETSLQLKG RNLTGPGTKI  660
HCTYMGGYTS KEVTDSSSPG SMYDEINVGG FKIHGPSPSI LGRCFIEVEN GFKGNSFPVI  720
IADASICKEL RLLESEFDEK AEASNIVSEE QAHDLGRPRS REEALHFLNE LGWLFQRKSV  780
PSMLEAPDYS LNRFKFLLIF SVERDYCVLV KTILDMLVER NMCRDELSKE SLEMLHEIQL  840
LNRSVKRRCR EMADLLIHYS IIGLDNSSRT YIFPPNVGGP GGITPLHLAA CASGSDGLVD  900
ALTNDPQEIG LSCWNSVLDA NGQSPYAYAF MTKNHSCNLL VARKLSDKRN GQISVAIGNE  960
IEQVAMEQEQ RTMSQFQRES KSCAKCASVA AKFHGRFPGS RGLLQRPYIH SMLAIAAVCV  1020
CVCLFFRGAP DIGLVAPFKW ENLDYGTI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-32	111	194	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00664	PBM	Transfer from Potri.002G002400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0016s0070.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024450222.1	0.0	squamosa promoter-binding-like protein 14 isoform X1
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2K2BB79	0.0	A0A2K2BB79_POPTR; Uncharacterized protein
STRING	POPTR_0002s00440.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	SapurV1A.0016s0070.2.p

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]