PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0015s0980.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 608aa    MW: 66407 Da    PI: 9.2447
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0015s0980.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-057092123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            + C+ C+k F r  nL+ H r H
  SapurV1A.0015s0980.1.p 70 FICEVCNKGFQREQNLQLHRRGH 92
                            89*******************88 PP
2zf-C2H213.10.00029146168123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC++C+k++  +s+ k H +t+
  SapurV1A.0015s0980.1.p 146 WKCEKCSKRYAVQSDWKAHSKTC 168
                             58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-66992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-76992No hitNo description
SMARTSM003550.00527092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997092IPR007087Zinc finger, C2H2
PfamPF121713.0E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355160111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-7141166No hitNo description
SMARTSM00355130146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAASSSSVPF FGTREEDQNQ MKQQHSSTPT SSSAQAPPPP KKKRNQPGTP NPDAEVIALS  60
PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTTKEVRRKV YLCPEPACVH  120
HDPSRALGDL TGIKKHYSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAQE SARNPPPNLN TFGSHLYGSS NMTLGSSQGA TQISSLQDHS  240
NQSTDVLRLG GGVRPGQFDH LFPPSIGSSS FRPPQQMPSS SFFMQETSQN YHDENQSHEQ  300
ELLQNKPFHH GMMQFADIHN TTSNPPSAGN IFNLSFLSSS STTNSNNANN PNNLPTSGLQ  360
ISEHFNNQND GGGGSEGTNN FSNNVMGNQM TSAVPSLFAT SVQNDNMVSH MSATALLQKA  420
AQMGSTSSNN SASLLRNFGS SSSSGAKSDR PLVDGNFGGM FSDSENNLHE LMNSFSPGNP  480
SIFGSGHAQE NPYGGYITNR TSLDQGKQPH GRNFSNINMD EAKLHQSLNA SNIGGSDRLT  540
RDFLGVGPQM VRSMSGSSGF SQREKQQQQR QHHGMDMADS SLDSERRNSN ISAAPTSQSF  600
GGKGSFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-34142203364Zinc finger protein JACKDAW
5b3h_F7e-34142203364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0015s0980.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084940.0AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379802.20.0protein indeterminate-domain 5, chloroplastic
RefseqXP_006379803.20.0protein indeterminate-domain 5, chloroplastic
RefseqXP_006379804.20.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024463340.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024463341.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-144IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2K1ZH360.0A0A2K1ZH36_POPTR; Uncharacterized protein
STRINGPOPTR_0008s14180.40.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-134indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]