PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0015s0840.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family BBR-BPC
Protein Properties Length: 280aa    MW: 31347.8 Da    PI: 10.0001
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0015s0840.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind321.91.9e-9812791301
               GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkal 74 
                             mddd+ +  n+gyyep+   ke lglq m s+ +rd+k     r+    +++ ++a+ ++d         m++ +rd++++      
  SapurV1A.0015s0840.1.p   1 MDDDALNMHNWGYYEPS--YKEPLGLQWMPSMVDRDTKHflprRDPINIMIGANGAYLPHDsvvsdapvhMNY-MRDSWINR----- 79 
                             9***9988*******99..999****************999987766669***********************.9******9..... PP

               GAGA_bind  75 verdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
                                 +k+l+ l+ +         ++ vl++t+ ++s+q+l+ p+    +   ++ + +e + ++++ + + +++++  ++++k+p +
  SapurV1A.0015s0840.1.p  80 ----EKFLNPLPPNP--------NYVVLPQTSDAHSMQMLQSPN----SSRDERVSRIEDPSVSKEGN-QLKRRQVG-GASPKTPTA 148
                             ....89999998544........4889************43322....22234445555666655444.34444444.355555555 PP

               GAGA_bind 162 kkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                             kk +k+k+         +++++ +r+k  kks+d+v+ng+++D+s++P+P+CsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+st
  SapurV1A.0015s0840.1.p 149 KKPRKPKD--------GNNNTV-QRAKPAKKSVDVVINGIDMDISGIPIPICSCTGTPQQCYRWGCGGWQSACCTTNVSIYPLPMST 226
                             55555555........222222.57899*********************************************************** PP

               GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                             krrgaRiagrKmSqgafkk+LekLaaeGy+++np+DLk++WA+HGtnkfvtir
  SapurV1A.0015s0840.1.p 227 KRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTYWARHGTNKFVTIR 279
                             ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062178.6E-1071279IPR010409GAGA-binding transcriptional activator
SMARTSM012265.9E-1821279IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDDDALNMHN WGYYEPSYKE PLGLQWMPSM VDRDTKHFLP RRDPINIMIG ANGAYLPHDS  60
VVSDAPVHMN YMRDSWINRE KFLNPLPPNP NYVVLPQTSD AHSMQMLQSP NSSRDERVSR  120
IEDPSVSKEG NQLKRRQVGG ASPKTPTAKK PRKPKDGNNN TVQRAKPAKK SVDVVINGID  180
MDISGIPIPI CSCTGTPQQC YRWGCGGWQS ACCTTNVSIY PLPMSTKRRG ARIAGRKMSQ  240
GAFKKVLEKL AAEGYNFANP IDLKTYWARH GTNKFVTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0015s0840.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1446250.0EF144625.1 Populus trichocarpa clone WS01116_B19 unknown mRNA.
GenBankEU1305600.0EU130560.1 Populus trichocarpa GAGA-motif binding transcriptional activator (BBR/BPC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312486.10.0protein BASIC PENTACYSTEINE2
SwissprotQ9SKD01e-106BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA8D1970.0A8D197_POPTR; BBR-BPC family protein
STRINGPOPTR_0008s13960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-98basic pentacysteine 2