PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0015s0530.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 660aa    MW: 71494.1 Da    PI: 6.2826
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0015s0530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.7e-28222275155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  SapurV1A.0015s0530.1.p 222 KPRVVWSVELHQQFVSAVNHL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 275
                             79*******************.********************************8 PP
2Response_reg76.11.3e-25381461109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl+vdD+ + ++ll+++l++  y +v++++++++al+ll+e++  +D++l D+ mp+mdG++ll+ +  e  +lp+i+++a g  + 
  SapurV1A.0015s0530.1.p  38 VLVVDDDITCLRLLEKMLRRCLY-HVTTCSQATAALKLLRERKgcFDVVLSDVHMPDMDGFKLLELLGLEM-DLPVIMMSADGRTSA 122
                             89*********************.******************************************96644.8************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + +  Ga d+l Kp+ +eel +
  SapurV1A.0015s0530.1.p 123 VMRGIIHGACDYLIKPIREEELKN 146
                             *********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.5E-4235170No hitNo description
SuperFamilySSF521723.27E-3535163IPR011006CheY-like superfamily
SMARTSM004486.1E-3036148IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.70937152IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-2238146IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.21E-2839152No hitNo description
PROSITE profilePS5129410.954219278IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-29219280IPR009057Homeodomain-like
SuperFamilySSF466892.87E-19220279IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24222275IPR006447Myb domain, plants
PfamPF002492.2E-6224273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MAALQRVASS LGTSASTYGS CKGAGVKVSD QFPVGLRVLV VDDDITCLRL LEKMLRRCLY  60
HVTTCSQATA ALKLLRERKG CFDVVLSDVH MPDMDGFKLL ELLGLEMDLP VIMMSADGRT  120
SAVMRGIIHG ACDYLIKPIR EEELKNIWQH VIRKKWHDSK EQEHSGSFED NDWHKQGNDD  180
AEIASSVHEG AEGVLKDQKK RSIAKEEDDA ELENDDPSAS KKPRVVWSVE LHQQFVSAVN  240
HLGIDKAVPK RILELMNVPG LTRENVASHL QKFRLYLKRL SGVAQQGGIS NTFCGPLDSN  300
VKLNPLGRYD IQVLAASSQI PPQTLAALHA ELFGHPAGSM VTTVDQPALL QASMQGPKCI  360
PVEPGMAFGQ PLVKCQTNMS KRFPQNVVSA EEVAPGFVAW PSNSVGTVGP GSNLGGMSSQ  420
NSNMLMDLLQ QQKQQQQSQQ LSSLPEPSRV INVQPSCLVV PSQTSATFQA GNSPASVNQN  480
YSRSPMIDYS LLSPQSNNSS LNIGQVSNGD LKTTGVSGYS GLGSISPLSS CSVNPDNSSQ  540
QVQSSTMTIR AARQLPGLGP DISNFQGSYG AKSSEVLDQG PLRNLGFVGK CTSIPGRLAV  600
DEFESTMSNL EHEKFYMEMN GNKVKQEPNI EFTDNTRVGI PILSQLPPTS SDLMSVFTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-24218281164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0015s0530.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081400.0FN908140.1 Populus x canadensis mRNA for putative B-type response regulator 15 (rr15 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311532.20.0two-component response regulator ORR21
SwissprotA2XE311e-163ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-163ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLB9HJH20.0B9HJH2_POPTR; Two-component response regulator
STRINGPOPTR_0008s13490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-105response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]