PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0015s0380.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 482aa MW: 52967 Da PI: 7.4083 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.3e-05 | 126 | 148 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+s+++ ++ +H t+ SapurV1A.0015s0380.1.p 126 FECPICGQSYKSEEEVSTHVETC 148 89*****************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.10.20.90 | 2.5E-6 | 21 | 49 | No hit | No description |
CDD | cd09212 | 6.24E-18 | 183 | 277 | No hit | No description |
SuperFamily | SSF143503 | 3.92E-17 | 189 | 276 | IPR018997 | PUB domain |
Pfam | PF09409 | 2.9E-15 | 192 | 258 | IPR018997 | PUB domain |
SMART | SM00580 | 3.4E-15 | 194 | 258 | IPR018997 | PUB domain |
SuperFamily | SSF54236 | 6.72E-11 | 346 | 454 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 2.5E-6 | 360 | 426 | No hit | No description |
PROSITE profile | PS50033 | 9.635 | 372 | 456 | IPR001012 | UBX domain |
Pfam | PF00789 | 2.5E-4 | 373 | 423 | IPR001012 | UBX domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MDDMKDKFKG LMKKVSSSSS PAKFKGQGRV LGGGGSTPSQ SSSGSTNPLH ARYSQPVNSN 60 PNSKPKPNPS SSLNSSSNSK PLPEKGSNLD QNKPASVNKT TNGFDPFDSL ITTGKRSQNG 120 YSLNVFECPI CGQSYKSEEE VSTHVETCIN NSNANSSVES NDRVVGDGNV VEESSGSELE 180 TCISAYLSAK PLEGSVEVVL RLLRNIVKEP ANAKFRRIRM GNPKIREAVI EVAGGVELLE 240 IVGFGLKEEG GEMWAILEEA PKEERIGLIN KVIRLLEPRK EGQKEPRAEG KPSDAPAETE 300 EQVEPKKVDR QIRVFFSVPE NVAARIELPD SFYSLSAEEI KRETDMRKKK IAESQLLIPK 360 SYKEKQAKAA RKRYKRTIIR IQFPDGVVLQ GVFAPWESTT ALYEFVSSAL KDPGLEFELL 420 HPVAVKRRVI PHFPSVGERV TTLDAEDLVP SYLIKFRPIE TDSSVFTGLC NELLEISEPL 480 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ifs_A | 1e-12 | 327 | 456 | 23 | 146 | Tether containing UBX domain for GLUT4 |
5ifs_C | 1e-12 | 327 | 456 | 23 | 146 | Tether containing UBX domain for GLUT4 |
5ifw_A | 4e-13 | 327 | 456 | 23 | 146 | Tether containing UBX domain for GLUT4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0015s0380.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311527.2 | 0.0 | plant UBX domain-containing protein 2 | ||||
Swissprot | Q9ZU93 | 0.0 | PUX2_ARATH; Plant UBX domain-containing protein 2 | ||||
TrEMBL | B9HJF4 | 0.0 | B9HJF4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s13320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8944 | 25 | 29 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0015s0380.1.p |
Publications ? help Back to Top | |||
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