PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0014s0910.5.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C3H

Protein Properties

Length: 307aa MW: 32429.5 Da PI: 7.9894

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0014s0910.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.3e-08	1	18	10	27
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 +rt Ck+G CkF+H++ SapurV1A.0014s0910.5.p 1 MRTRSCKFGVACKFHHPQ 18 89**************97 PP
2	zf-CCCH	35.3	1.9e-11	143	168	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ Ck++H++ SapurV1A.0014s0910.5.p 143 DQPECRHFMSSGTCKYGSDCKYHHPK 168 689*********************96 PP
3	zf-CCCH	31.8	2.5e-10	188	213	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ +G+Ck+G++C++ H+ SapurV1A.0014s0910.5.p 188 PGQAVCPDYNMYGICKFGPTCRYDHP 213 57899********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.657	1	19	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-5	1	18	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	78	2	18	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-5	141	168	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.399	141	169	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-9	143	168	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.5E-7	144	170	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-5	147	168	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.14E-5	186	213	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.5E-7	187	214	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.084	187	215	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-7	189	213	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MRTRSCKFGV ACKFHHPQPA SLGTSLPHTG AGAFGSTGSP TVPSSGLPYV GGLPTWSLPR 60 APYMPGTHLQ GPQAYMPVVV SPSQGIVPVP GWNAYMGNLN PMSSPGIMGS NRAYDSRSQG 120 DSGSSGQAHL LSAAIPALPE RPDQPECRHF MSSGTCKYGS DCKYHHPKER IAQLTTNTMG 180 PLGLPLRPGQ AVCPDYNMYG ICKFGPTCRY DHPLPTYPCN YSLSLPSLSI MDSSMVAYPR 240 TAHAALSLAT PVSLSKLPDL ILSPDGSSYN KHQNSDSNTK TLDDPTEHAG SPPPHSSQAS 300 SEPSHD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0014s0910.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302855.1	0.0	zinc finger CCCH domain-containing protein 3
TrEMBL	B9GTS9	0.0	B9GTS9_POPTR; Uncharacterized protein
STRING	POPTR_0002s21790.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	3e-45	C3H family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0014s0910.5.p