PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0014s0680.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 473aa MW: 52171.6 Da PI: 8.0146 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.8 | 1.3e-29 | 104 | 161 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C+vkk++e+s+ d+k+v+i+Y geH+h+k SapurV1A.0014s0680.2.p 104 EDGYRWRKYGQKLVKGNEFIRSYYKCTHPSCQVKKQLECSH-DGKLVDIVYIGEHEHPK 161 7***************************************9.***************85 PP | |||||||
2 | WRKY | 100.1 | 1.4e-31 | 270 | 328 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkgs++prsYYrC+s++Cpvkk+ver+ +dpk v++ Y g+H+h+ SapurV1A.0014s0680.2.p 270 VNDGYRWRKYGQKLVKGSPNPRSYYRCSSPRCPVKKHVERAYNDPKSVITSYVGQHDHD 328 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-26 | 98 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.227 | 98 | 162 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-24 | 99 | 162 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-33 | 103 | 161 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-23 | 104 | 160 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.2E-32 | 256 | 330 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.26E-27 | 264 | 330 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.787 | 265 | 330 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-34 | 270 | 329 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.5E-24 | 271 | 327 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 473 aa Download sequence Send to blast |
MVLSKEVSPK ELQKRQTPDG GTDTTQQTCG SGGDASQQKG IPPSNTPGKP LENTGGRILQ 60 LDKEGSVSSL AARKLSHSPG SDLHSLQSSQ EGWSPSITRE KVSEDGYRWR KYGQKLVKGN 120 EFIRSYYKCT HPSCQVKKQL ECSHDGKLVD IVYIGEHEHP KPQLNLPQEV GCVLTLVEEK 180 PDNLLLTGIE ESQAPNPIES TTTSQISTVT SGEDVKRVLS EPNRIRDEVD DYQRSKQRKK 240 GSCNDDSTPV DKPTSEPRLV IKKKYEVDTV NDGYRWRKYG QKLVKGSPNP RSYYRCSSPR 300 CPVKKHVERA YNDPKSVITS YVGQHDHDMP PSRTVTHNTT GFNTATTTQD GESGAKSGES 360 DAISLDKVAY NSSDSNIKSE EKMSSELRNK LKESISGHES ESREQQNGKS SATKAKDIVF 420 NANPVSAGRL TEQNDDESRI ESKEKSAVRA TTPGPKSNPN EQHMLNSEPV QS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-31 | 102 | 331 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0014s0680.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375555.1 | 0.0 | WRKY transcription factor 1 | ||||
Refseq | XP_006375556.1 | 0.0 | WRKY transcription factor 1 | ||||
Refseq | XP_024440287.1 | 0.0 | WRKY transcription factor 1 | ||||
TrEMBL | C9DHZ1 | 0.0 | C9DHZ1_9ROSI; WRKY transcription factor 2 | ||||
STRING | POPTR_0014s16220.2 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G04880.2 | 4e-79 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0014s0680.2.p |