PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0014s0380.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 975aa    MW: 108624 Da    PI: 6.372
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0014s0380.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-41149226178
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             +Cqve+C +dls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  SapurV1A.0014s0380.2.p 149 VCQVEDCGVDLSNAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 226
                             6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-33145211IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.308147224IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-39148229IPR004333Transcription factor, SBP-box
PfamPF031104.5E-30150223IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.5E-6742857IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.76E-7750858IPR020683Ankyrin repeat-containing domain
CDDcd002048.69E-8751858No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
METIFGGEAR HFYAMGSTDK REVGKRGLEW NLNDWKWDGD LFIASPLNPV PSTNVSRQLF  60
PLGVGTGVPA TGNSYSSSSF SDEVNLGVEK GKRELEKRRR VVVIDDDNLN DQETGGLNLK  120
LGGERDVGNW EGSSGKKTKL VGGGLSRAVC QVEDCGVDLS NAKDYHRRHK VCEMHSKASK  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTNPDTVG NGSSMNDDQT  240
SGYLLIRLLR ILSNMHSNRS NETTDQDLLT HLLRSLASHS VEHGGRNLFG LLQEPRDLST  300
SFGNSEQVMR MHDANGANIQ TTFSLKPSIP NNFATYSEVR ESTAVQVKMN NFDLNDIYVD  360
SDDGTEDIER SPAPVNARTS SLDCPSWVQK DSHQSSPPQT SRNSDSASAQ SPSSSGGEAQ  420
CRTDRIVFKL FGKEPNDFPL VLRAQILDWL SHSPTDIESY IRPGCIILTI YLHQAEAAWE  480
ELCCGLGSSL SRLLDVSEDT FWRTGWVYIR VQHQIAFVYN GQVVVDTSLP LTSNNCSKIL  540
SVKPIAITAT ERTEFLIKGI NLSRPATKLL CAVEGNYMVQ ENKQEVMDGV DSFEGHDEVQ  600
CVKFSCSIPT VTGRGFIEIE DHGFSSSFFP FLVAEEDVCS EIRMLEGVLE FTETDADFEE  660
IEKMEAKNQA MNFVHEIGWL LHRIQLKSRL GHLDPSMDLF PLRRFKWLME FSMDHEWCAV  720
VRKLLNVLHN GIVGTGEHSS LNVALAEMGL LHRAVRRNSR SLVELLLRYV PEKFGSEDEA  780
LFGGSHGSIL FRPDVTGPAG LTPLHIAAGK DGSEDVLDTL TEDPGMVGIE AWKNARDSTG  840
FTPEDYARLR GHYTYIHLVQ RKINKRQAVG GHVVLDIPSN LSDSNITEKQ NEGLTSSLEI  900
GQTASRPIQR NCKLCSKKVV YGIASRSQLY RPAMLSMVAI AAVCVCVALL FKSCPEVLYV  960
FRPFRWEMLD YGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-301492231084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0014s0380.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450080.10.0squamosa promoter-binding-like protein 1 isoform X2
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A2I4KKA40.0A0A2I4KKA4_POPTR; SBP family protein
STRINGPOPTR_0002s18970.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]