PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0013s0770.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 312aa MW: 33120.1 Da PI: 9.3434 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 68.6 | 9.9e-22 | 198 | 260 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae eeL+ kv++L +eN+aLk+e+++ +++++kl+ e+ SapurV1A.0013s0770.6.p 198 ERELKRERRKQSNRESARRSRLRKQAEAEELACKVETLNTENMALKSEIDQFTEKSQKLRLEN 260 89*********************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.5E-9 | 1 | 32 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 3.0E-28 | 65 | 179 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.6E-17 | 192 | 257 | No hit | No description |
Pfam | PF00170 | 3.6E-20 | 198 | 260 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.3E-20 | 198 | 262 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.691 | 200 | 263 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.75E-11 | 201 | 257 | No hit | No description |
CDD | cd14702 | 6.65E-19 | 203 | 252 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 205 | 220 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MWGPPQPMMA PYGAPYAAIY SHGGVYAHPA VPIGSHPHGP GVLSSPAANT PLSAETPTKS 60 SGNTDRGLMK KLKGFDGLAM SIGNGDAESA EGGSRLPQSM ETEGSSDGSD GNTARGKKRS 120 REGTPTVGGD KKIETNRGPL LGEVNPSTDK VLGAVVDPGM TTALELRNPS SVNVAKTNPA 180 TIPQPGVLLP SEGWVQNERE LKRERRKQSN RESARRSRLR KQAEAEELAC KVETLNTENM 240 ALKSEIDQFT EKSQKLRLEN AALMEKLKNA RLGPTQEMVL NNIDEQRNSN SGAKLHQLLD 300 ASPRADAVAA G* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 214 | 220 | RRSRLRK |
2 | 214 | 221 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0013s0770.6.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC208094 | 5e-45 | AC208094.1 Populus trichocarpa clone JGIACSB09-L10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011037554.1 | 0.0 | PREDICTED: G-box-binding factor 3-like isoform X2 | ||||
Swissprot | Q99089 | 4e-95 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A3N7FZK4 | 0.0 | A0A3N7FZK4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s08990.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-81 | G-box binding factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0013s0770.6.p |
Publications ? help Back to Top | |||
---|---|---|---|
|