PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0013s0770.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bZIP | ||||||||
Protein Properties | Length: 374aa MW: 39844.4 Da PI: 8.3935 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 68.2 | 1.3e-21 | 259 | 321 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae eeL+ kv++L +eN+aLk+e+++ +++++kl+ e+ SapurV1A.0013s0770.1.p 259 ERELKRERRKQSNRESARRSRLRKQAEAEELACKVETLNTENMALKSEIDQFTEKSQKLRLEN 321 89*********************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.7E-36 | 1 | 93 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 4.3E-28 | 126 | 240 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.5E-17 | 253 | 318 | No hit | No description |
SMART | SM00338 | 1.3E-20 | 259 | 323 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.9E-20 | 259 | 321 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.691 | 261 | 324 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.06E-10 | 262 | 318 | No hit | No description |
CDD | cd14702 | 3.36E-19 | 264 | 313 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 266 | 281 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MGNNEEGKSS ASDKSSPAQQ DQTNIHVYPD WAAMQAYYGS RVALPPYYNS AVASGHAPHP 60 YMWGPPQPMM APYGAPYAAI YSHGGVYAHP AVPIGSHPHG PGVLSSPAAN TPLSAETPTK 120 SSGNTDRGLM KKLKGFDGLA MSIGNGDAES AEGGSRLPQS METEGSSDGS DGNTARGKKR 180 SREGTPTVGG DKKIETNRGP LLGEVNPSTD KVLGAVVDPG MTTALELRNP SSVNVAKTNP 240 ATIPQPGVLL PSEGWVQNER ELKRERRKQS NRESARRSRL RKQAEAEELA CKVETLNTEN 300 MALKSEIDQF TEKSQKLRLE NAALMQEKLK NARLGPTQEM VLNNIDEQRN SNSGAKLHQL 360 LDASPRADAV AAG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 275 | 281 | RRSRLRK |
2 | 275 | 282 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0013s0770.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208094 | 5e-45 | AC208094.1 Populus trichocarpa clone JGIACSB09-L10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441244.1 | 0.0 | common plant regulatory factor 1 isoform X3 | ||||
Swissprot | Q99089 | 1e-124 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A3N7FZK4 | 0.0 | A0A3N7FZK4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s08990.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5301 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-110 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0013s0770.1.p |
Publications ? help Back to Top | |||
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