PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0013s0590.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 365aa    MW: 40817.1 Da    PI: 4.9414
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0013s0590.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.4e-29128189159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+ed +++e+tY+g+H+++
  SapurV1A.0013s0590.1.p 128 LDDGFSWRKYGQKDILGANFPRGYYRCTHRhsqGCLATKQVQRSDEDRSIFEVTYRGRHTCN 189
                             59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28120190IPR003657WRKY domain
PROSITE profilePS5081122.722123191IPR003657WRKY domain
SuperFamilySSF1182907.19E-26127190IPR003657WRKY domain
SMARTSM007743.8E-42128190IPR003657WRKY domain
PfamPF031065.2E-27129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEKSMGRENR TLISELTQGK ELAKQLSHHL SPSSSLEARQ FLLDKILSSY EKSLSLLNWG  60
AWVADQPKPT VGIVDSTHSF AISSPRSEVS DQDCKEECGR DVYKKRKTQS RWTEQVKVCS  120
GTGLEGPLDD GFSWRKYGQK DILGANFPRG YYRCTHRHSQ GCLATKQVQR SDEDRSIFEV  180
TYRGRHTCNQ ASPSPVASPS PKNDFSKQSK YHCKQQQQQN QDKPKPTEDI FVNFGSDCVQ  240
VKNEELGSKD DIFPSFSFPC TSFGNGDEEN NIFTESMMEN SFLGSFSPTF ISPATSESNY  300
FSMSACPLNS FGIGYQNVQT PESELTTEII SAPTSVTNSP DLDISIEMVD FDTTFPFDNP  360
DFFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-191281861474Disease resistance protein RRS1
5w3x_D4e-191281861474Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0013s0590.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774260.0GQ377426.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320852.30.0probable WRKY transcription factor 46
TrEMBLA0A2I4KKA20.0A0A2I4KKA2_POPTR; WRKY family protein
STRINGPOPTR_0014s09190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-46WRKY family protein