PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0013s0230.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARF | ||||||||
Protein Properties | Length: 686aa MW: 76032 Da PI: 6.9787 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72 | 7.5e-23 | 116 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++ +k+a+e+ +++ + +++l +d++g W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF SapurV1A.0013s0230.3.p 116 FCKILTASDTSTHGGFSVLRKHATEClppldMSQATPTQELAARDLHGYDWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVF 202 99****************************9555566679*********************************************** PP EE-SSSEE..EEEEE- CS B3 83 kldgrsefelvvkvfr 98 + +++el+v+++r SapurV1A.0013s0230.3.p 203 L--RGDNGELRVGLRR 216 *..3489999**9997 PP | |||||||
2 | Auxin_resp | 94.2 | 2e-31 | 242 | 321 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+s F v+Y+Pr+ ++++ ++k+++a+k+ +svGmRfkm+fe+eds+err++Gt+vgv d++p +W++S WrsLk SapurV1A.0013s0230.3.p 242 ASHAVLTQSLFLVYYKPRT--NQYIIGLNKYLEAVKNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSP-EWSGSIWRSLK 321 68999*************6..99************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-40 | 107 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-39 | 109 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.35E-18 | 114 | 216 | No hit | No description |
SMART | SM01019 | 3.3E-21 | 116 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-21 | 116 | 216 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.885 | 116 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-29 | 242 | 321 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.2E-11 | 545 | 657 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 6.34E-11 | 564 | 645 | No hit | No description |
PROSITE profile | PS51745 | 24.801 | 570 | 650 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MAQTERAGDD LYTELWKACA GPLVDVPKAG ERVFYFPQGH MEQLEASTTQ ELNQQIPRFN 60 LPSKILCRVI NIQLLAEQDT DEVYAQITLQ PEADQTKPTS PEPCPPEPAK QTVHSFCKIL 120 TASDTSTHGG FSVLRKHATE CLPPLDMSQA TPTQELAARD LHGYDWRFKH IFRGQPRRHL 180 LTTGWSTFVT SKRLVAGDSF VFLRGDNGEL RVGLRRLARQ QSSIPSSVIS SQSMHLGVLA 240 TASHAVLTQS LFLVYYKPRT NQYIIGLNKY LEAVKNGFSV GMRFKMRFEG EDSPERRFTG 300 TIVGVGDFSP EWSGSIWRSL KIQWDEPATI QRPERVSPWD IEPFAAPSSP NLTQQVVKSK 360 RPRPVDIPAS AASAFWYHGP TQSRELVQRG SIIEAQSSES HIWSMRQKEV DSSLNNSGGC 420 NSRARPEGIW LPSSHMNVSL NFFPDPAGDN KCAKTQSIIS GFASSISSMQ SDGLINEQVE 480 KGRKFENSVG CRLFGIDLTS NSGITAAPEK EPAYPIVDYN EAKGLFPAAG EAEKAQTMEF 540 SMSSKQQKQV VPDALAKESQ SKQGSTTSTR TRTKVQMQGV AVGRALDLTV LKGYKDLIIE 600 LGKMFEIGEL STREKWTVVF TDDEGDMMLV GDDPWPEFCK MVKKIYIYSS EEVKKMSARC 660 KLPASSFEGE GTAVSMESEH KSDAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-174 | 9 | 344 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-174 | 9 | 344 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-174 | 9 | 344 | 17 | 355 | Auxin response factor 1 |
4ldx_A | 1e-173 | 9 | 344 | 17 | 355 | Auxin response factor 1 |
4ldx_B | 1e-173 | 9 | 344 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 359 | 363 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0013s0230.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT164698 | 0.0 | KT164698.1 Populus tomentosa clone Potom.002G07206 auxin response factor 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440876.1 | 0.0 | auxin response factor 18 isoform X1 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A3N7GVY3 | 0.0 | A0A3N7GVY3_POPTR; Auxin response factor | ||||
STRING | POPTR_0014s09560.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0013s0230.3.p |
Publications ? help Back to Top | |||
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