PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0012s0880.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WOX | ||||||||
Protein Properties | Length: 315aa MW: 34846.8 Da PI: 9.2906 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.2 | 2.5e-17 | 57 | 117 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ +l ++ +++V++WFqNr+ + k+ SapurV1A.0012s0880.4.p 57 KPRWNPKPEQIRILEAIFNSgLVNPPRDEIRKIRVQLqeygQVGDANVFYWFQNRKSRSKH 117 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 109.8 | 1.6e-35 | 56 | 118 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sGl++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R+++k SapurV1A.0012s0880.4.p 56 PKPRWNPKPEQIRILEAIFNSGLVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHK 118 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.19E-12 | 51 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.171 | 53 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-8 | 55 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.55E-6 | 56 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-8 | 56 | 125 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.4E-15 | 57 | 117 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MASSNRHWTS KFKSKPCNLH DHQWHHDINP SSIMSTGCHR TPCTSVPGCD ERSPEPKPRW 60 NPKPEQIRIL EAIFNSGLVN PPRDEIRKIR VQLQEYGQVG DANVFYWFQN RKSRSKHKMR 120 NLQNPEQHSS NQQQITPPTT KPVTTNLAAP SSSSSSSEKS SPRESKRTLS LSSPSFMDAS 180 NLSTSSVNKT YFRAHDESVP EPFFFQSQQT GGGGAGAFAQ GFCFSELSNV VHLQDHTVGR 240 CSNLLLSEIM NSSASKKVNH EEKNLTMQPQ LFYTPASPVT DSNGLAPPLT PPTHTSTVAS 300 QSTINQIQGN ISFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0012s0880.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF982708 | 0.0 | KF982708.1 Populus tomentosa WOX9a (WOX9a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454266.1 | 1e-172 | WUSCHEL-related homeobox 9 | ||||
Swissprot | Q6X7J4 | 5e-61 | WOX9_ARATH; WUSCHEL-related homeobox 9 | ||||
TrEMBL | W8P770 | 0.0 | W8P770_POPTO; WOX9a | ||||
STRING | POPTR_0004s05090.1 | 1e-165 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 8e-61 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0012s0880.4.p |
Publications ? help Back to Top | |||
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