PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0012s0660.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 1727aa MW: 195285 Da PI: 6.14 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 27 | 83 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+e+r+eL++klgL++rq ++WF+ rR k+kk SapurV1A.0012s0660.1.p 27 PKRQMKTPFQLETLEKAYAAaETYPSEEMRAELSEKLGLSDRQLQMWFCHRRLKDKK 83 69*****************99**********************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-17 | 8 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.57E-15 | 15 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 23 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-16 | 25 | 88 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-16 | 27 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.06E-12 | 28 | 84 | No hit | No description |
PROSITE profile | PS50827 | 16.662 | 515 | 574 | IPR018501 | DDT domain |
SMART | SM00571 | 4.3E-22 | 515 | 574 | IPR018501 | DDT domain |
Pfam | PF02791 | 6.7E-18 | 516 | 571 | IPR018501 | DDT domain |
Pfam | PF05066 | 4.5E-16 | 699 | 767 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 6.9E-7 | 906 | 949 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.8E-13 | 1088 | 1160 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1727 aa Download sequence Send to blast |
MEANSDEEDH NRSKSNVMSS NEGQSKPKRQ MKTPFQLETL EKAYAAAETY PSEEMRAELS 60 EKLGLSDRQL QMWFCHRRLK DKKETPVKKQ RNAAPLPESP LEEMRVAGAE NGSDYGSGSG 120 SGSSPLSESR KVVLDDGHMM RRYYDSSPQS VMELRAIACV EAQLGEPLRE DGPILGMDFD 180 HLPPDAFGTP IASISEQQKR MGYSYEDKIY ERHDAKSSKD HASIRSDAYG LAQSPYHDSP 240 ADTLRGRASP FGAGQMPRAR LLSQQDKRGH IFSSPQRDDD FIPQRDTFAN NRTSAQSITH 300 PIMGPENPNV FSDAQTFHHD TELRLERKRK IEEPRTIRDV EAYESRMRKE LEKQDILRRK 360 NEERMRKEME RHDRERRKEE ERLMRERQRE EERTLREQKR EHERREKFMQ KEYLRAEKRR 420 QKEELRREKE AVKRKAAMEK ATARKIAKDS LDLIEDEQLE LMELAAASKG LASIVNLNYD 480 TLQNLDSFRD LLITFPSKSV QLKKPFGFQP WLDSEENIGN LLMVWRFFIT FADVLGLWPF 540 TLDEFVQAFH DYDSRLLSEL HIALLKLIIK DIEDVARTPS SGLGINQYYT ANPEGGHPQI 600 VRGAYTWGFD IRNWQQHLNP LTWPEILRQL ALSAGFGPQL RKRNATWTGL GDIDELQVKD 660 CEDIISTIRN GSAAENAFAL MREKGLLLPR RSRHRLTPGT VKFAAFHVLS LEGSKGLTVL 720 ELADKIQKSG LRDLTTSKTP EASISVALTR DQKLFERIAP STYCLRAAFR KDPADAEAIL 780 AAARKKIRIF ENGFLGGEVV DDVERDEDSE GDEDPEVDDL TTPLSANKSF VHSSKLNTLP 840 VSGKYKVGND VSLTVQNESE KGLSTFSLNG PKDVMAPIII EQCVTHKDEG TNNGNGRDIE 900 IDETKSGESW IQGLTEGEYS HLTVEERLNA LVVLVGIANE GNSIRAVLED RLEAANALKK 960 QMWAEAQLDR SRLKEEFVSK LDFPSLTVGR VETQFASSAV EGSQSPLVLA DSKNKEASPS 1020 NAEDRKPLAE NVENHLSIVL SEKALVVQDL SMNPDNISMQ QHGYASKRSR SQLKAYVTHL 1080 AEEMYIYRSL PLGQDRRRNR YWQFVASASR NDPCSGRIFV ELHDSNWRVI DSEEAFDTLL 1140 SSLDTRGVRE SHLRIMLQKI ESSFKENLQR NLWSPSIVCQ SGTTDDKKAE KDNGNCAASI 1200 DGPSSMLRVS SSDSFDTFSS FRIELGRTSA EKKGALKRYQ DFQNWMWKDC FNSSTLCSMK 1260 YGKKRCEQLL DTCNLCFSSY LSEDTHCLSC HQAFKVDNKN FDFAEHEIQC KEKSFDPGNA 1320 RACDSCLPLG VRLLTALLGS IEVSVPQEAL ESFWMEIRRK DWGVKLIKSS STEELLQRLT 1380 VFESAIKRQR LSSNFETTKE LLGSSVSSGS AAHDSASLGS VSLLPWIPKT SAAMALRLFE 1440 LDASIIYVKN EKPEPSTDKS VKVYMKLPSR YSDFKNEVEI KDVKLEEHNK EIVDLRGKRS 1500 NYKRGRGGRD QGLATKWQRR VPGLKSDTRR QSSSRGVQNL NQGSRQQGRK TNLQASSRGR 1560 RTVRKRRVEK MVAKEPLPGR MTNKVAAPMS YLSKKTAVHN SYVKSFRNLD DEDWSAKRGR 1620 MNAVGDDNSN SMEEAESDDN VEEEVSGQGN WEPRFNGTPN GWNGNSMEVS DDDGDASNGD 1680 ASNGVAAMGD DDSEGDVEMS DRSDREANQV QNDEGLDFAD SDEYSD* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 76 | 83 | RRLKDKKE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0012s0660.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011027776.1 | 0.0 | PREDICTED: uncharacterized protein LOC105127984 isoform X3 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A2K1YG45 | 0.0 | A0A2K1YG45_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s04840.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2523 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0012s0660.1.p |