PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0012s0500.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 341aa MW: 37282.1 Da PI: 8.2048

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0012s0500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	49	108	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk++ SapurV1A.0012s0500.3.p 49 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRV 108 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	48	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.2E-34	51	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MLGNCEKMVV ISSTTNEWPQ NQIDEKSLME STSKLMERRG EEVLSQPQQQ QALKCPRCDS 60 SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVRR PASAVDGANN 120 SVSSANPNPQ TPTDPISSTS NHINPLFYGL TSSNPSEMDL SFTGRFNSRG YSAVSGYHDL 180 QPQLNSLALG FSSGIMSADH DANGFNHTKQ IQDVVTSNSL LSSYSNFFGS ATTSTNTTSP 240 TIASLLASSF NQQKSTTRAP NQYQSLTVPF EDLQMSGNSE SGIGVKGVKT EHDQNRSSWN 300 VPCQNQIEQV GFSDPSMYWN TTTSVGSWHD PANMGSSVLL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0012s0500.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT164738	0.0	KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011027799.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A2K1YFZ8	0.0	A0A2K1YFZ8_POPTR; Uncharacterized protein
STRING	POPTR_0011s05450.1	1e-173	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	4e-38	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0012s0500.3.p