PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0012s0500.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 390aa MW: 43096 Da PI: 8.8516

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0012s0500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.2e-39	98	157	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk++ SapurV1A.0012s0500.1.p 98 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRV 157 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-30	97	156	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-33	100	156	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	102	156	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	104	140	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MATGSSPPLS LSSPLSFSII GQNMTRFLFL SFWKRISIER CYFYANKNTT LDVFLFVFLF 60 FYFPFSLVQN QIDEKSLMES TSKLMERRGE EVLSQPQQQQ ALKCPRCDSS NTKFCYYNNY 120 SLSQPRHFCK ACKRYWTRGG TLRNVPVGGG CRKNKRVRRP ASAVDGANNS VSSANPNPQT 180 PTDPISSTSN HINPLFYGLT SSNPSEMDLS FTGRFNSRGY SAVSGYHDLQ PQLNSLALGF 240 SSGIMSADHD ANGFNHTKQI QDVVTSNSLL SSYSNFFGSA TTSTNTTSPT IASLLASSFN 300 QQKSTTRAPN QYQSLTVPFE DLQMSGNSES GIGVKGVKTE HDQNRSSWNV PCQNQIEQVG 360 FSDPSMYWNT TTSVGSWHDP ANMGSSVLL*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MATGSSPPLS LSSPLSFSII GQNMTRFLFL SFWKRISIER CYFYANKNTT LDVFLFVFLF  60
FYFPFSLVQN QIDEKSLMES TSKLMERRGE EVLSQPQQQQ ALKCPRCDSS NTKFCYYNNY  120
SLSQPRHFCK ACKRYWTRGG TLRNVPVGGG CRKNKRVRRP ASAVDGANNS VSSANPNPQT  180
PTDPISSTSN HINPLFYGLT SSNPSEMDLS FTGRFNSRGY SAVSGYHDLQ PQLNSLALGF  240
SSGIMSADHD ANGFNHTKQI QDVVTSNSLL SSYSNFFGSA TTSTNTTSPT IASLLASSFN  300
QQKSTTRAPN QYQSLTVPFE DLQMSGNSES GIGVKGVKTE HDQNRSSWNV PCQNQIEQVG  360
FSDPSMYWNT TTSVGSWHDP ANMGSSVLL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0012s0500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT164738	0.0	KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024454290.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	A0A2K2APX0	0.0	A0A2K2APX0_POPTR; Uncharacterized protein
STRING	POPTR_0011s05450.1	1e-172	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	1e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0012s0500.1.p