PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0010s0740.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 432aa    MW: 47566.2 Da    PI: 9.1673
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0010s0740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05200222223
                             EETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                             +CpdCg+ F   ++L+ H+ + H
  SapurV1A.0010s0740.1.p 200 SCPDCGEIFMKADSLELHQAVrH 222
                             8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.808199227IPR007087Zinc finger, C2H2
PROSITE patternPS000280199222IPR007087Zinc finger, C2H2
SuperFamilySSF563999.59E-22224430No hitNo description
Gene3DG3DSA:3.90.228.108.1E-16225429IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MAKPKNSRTT MEVQQNQNLQ PLKTEKPPSW LVVRGLFSCK HLQAQQQKPE QKQRQQQKQD  60
QLRQAKEEKK NTQDQGRSAE ETSKKCKKMR CSGSICSNTK VMHRPGTASP EIQRKGASMG  120
SAGKNDTSSR SMKAPLLELN GVVSSTNSPL SASSNFSISN VSSFRGMSFG RFSGCYECGM  180
VVDPVLGTSR DHSLWGSICS CPDCGEIFMK ADSLELHQAV RHAVSELSPE DTSKNIVEII  240
FQSSWLKKQA PICKIDRILK VHNTQRTISK FEEHRDSIKA KAAKLPKKQP RCIADGNELL  300
RFHCTTFECS IGLNGSSNLC NAVPNCKICS IIKNGFKEST GGDDDGHGIL TTETSGKAHD  360
KATALEDGSS NKRAMLVCRV IAGRVKKSME GNIEDYDSVA AGMEVYSNLD ELYVFNPRAI  420
LPCFVVIYRG F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0010s0740.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2757469e-75GU275746.1 Populus balsamifera isolate KUU07 haplotype A unknown gene, partial sequence.
GenBankGU2757479e-75GU275747.1 Populus balsamifera isolate KUU07 haplotype B unknown gene, partial sequence.
GenBankGU2757489e-75GU275748.1 Populus balsamifera isolate LOV02 haplotype A unknown gene, partial sequence.
GenBankGU2757499e-75GU275749.1 Populus balsamifera isolate LOV02 haplotype B unknown gene, partial sequence.
GenBankGU2757509e-75GU275750.1 Populus balsamifera isolate STO11 haplotype A unknown gene, partial sequence.
GenBankGU2757519e-75GU275751.1 Populus balsamifera isolate STO11 haplotype B unknown gene, partial sequence.
GenBankGU2757529e-75GU275752.1 Populus balsamifera isolate WHR03 haplotype A unknown gene, partial sequence.
GenBankGU2757539e-75GU275753.1 Populus balsamifera isolate WHR03 haplotype B unknown gene, partial sequence.
GenBankGU2757549e-75GU275754.1 Populus balsamifera isolate MGR10 haplotype A unknown gene, partial sequence.
GenBankGU2757559e-75GU275755.1 Populus balsamifera isolate MGR10 haplotype B unknown gene, partial sequence.
GenBankGU2757569e-75GU275756.1 Populus balsamifera isolate GAL12 haplotype A unknown gene, partial sequence.
GenBankGU2757579e-75GU275757.1 Populus balsamifera isolate GAL12 haplotype B unknown gene, partial sequence.
GenBankGU2757589e-75GU275758.1 Populus balsamifera isolate HAY07 haplotype A unknown gene, partial sequence.
GenBankGU2757599e-75GU275759.1 Populus balsamifera isolate HAY07 haplotype B unknown gene, partial sequence.
GenBankGU2757609e-75GU275760.1 Populus balsamifera isolate INU03 haplotype A unknown gene, partial sequence.
GenBankGU2757619e-75GU275761.1 Populus balsamifera isolate INU03 haplotype B unknown gene, partial sequence.
GenBankGU2757629e-75GU275762.1 Populus balsamifera isolate NWL07 haplotype A unknown gene, partial sequence.
GenBankGU2757639e-75GU275763.1 Populus balsamifera isolate NWL07 haplotype B unknown gene, partial sequence.
GenBankGU2757649e-75GU275764.1 Populus balsamifera isolate FBK13 haplotype A unknown gene, partial sequence.
GenBankGU2757659e-75GU275765.1 Populus balsamifera isolate FBK13 haplotype B unknown gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027602.10.0PREDICTED: uncharacterized protein LOC105127850
TrEMBLA0A2K2BFP40.0A0A2K2BFP4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s08810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.16e-90C2H2-like zinc finger protein