PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0009s1100.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SRS

Protein Properties

Length: 294aa MW: 31583.1 Da PI: 9.1782

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0009s1100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	179.8	1.2e-55	81	242	6	154
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalss 88 +C+dCGn+akk+C+++RCRtCCks g++C+th+kstWvpaa+rrer + ++++ kr+r++ +++s++ s SapurV1A.0009s1100.1.p 81 RACRDCGNRAKKECQYRRCRTCCKSGGYECTTHLKSTWVPAARRRERLGYSSGGGGGGSSASssggGCIGGKRPRDN-VNATSKSFS 166 57*******************************************877766544433333345633445566655.222222222 PP DUF702 89 tklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 t+ ++a ++ +l+t s lP +v+++avfrcvrv++++ g +e+aY++ v+i+GhvfkG+LydqG++e SapurV1A.0009s1100.1.p 167 TSNNNAAASLNLDTGSsyqdgsfkqsLPVQVRAPAVFRCVRVTAINGGGAEVAYEAKVNISGHVFKGFLYDQGINE 242 33333333333333334555555557*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-53	81	241	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.4E-25	83	124	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.4E-23	193	240	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MLGLHNILFI APPPSSCNHQ QPPQAPSTHR ITDTNDQYGI ADNQESWTTL KKYPQESSFL 60 ERRALNAVED CDTAINIGPA RACRDCGNRA KKECQYRRCR TCCKSGGYEC TTHLKSTWVP 120 AARRRERLGY SSGGGGGGSS ASSSGGGCIG GKRPRDNVNA TSKSFSTSNN NAAASLNLDT 180 GSSYQDGSFK QSLPVQVRAP AVFRCVRVTA INGGGAEVAY EAKVNISGHV FKGFLYDQGI 240 NEKKLFPCNS KRDSSERNRD SSSPVVDPSE AYTATGNQRL LEVFVISRLR GGA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0009s1100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002303931.3	1e-156	protein SHI RELATED SEQUENCE 6
Swissprot	Q94CK9	1e-45	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	B9GWY7	1e-154	B9GWY7_POPTR; Uncharacterized protein
STRING	POPTR_0003s19550.1	1e-155	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-42	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	SapurV1A.0009s1100.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]