PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0009s0500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | AP2 | ||||||||
Protein Properties | Length: 548aa MW: 60265.1 Da PI: 6.5694 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.3e-15 | 166 | 225 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g SapurV1A.0009s0500.1.p 166 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 225 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 47.1 | 6e-15 | 270 | 319 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g SapurV1A.0009s0500.1.p 270 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 319 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.1E-12 | 166 | 225 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.74E-23 | 166 | 235 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-17 | 166 | 235 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.256 | 167 | 233 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-16 | 167 | 234 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-30 | 167 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 168 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-18 | 268 | 328 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.27E-24 | 268 | 327 | No hit | No description |
PROSITE profile | PS51032 | 19.375 | 269 | 327 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-18 | 269 | 327 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 269 | 333 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-9 | 270 | 319 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 309 | 329 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MNSNNWLSFP LSPTHPSLPA HLHASHPHQF SLGLVNDSME NPFQTQEWSL LNTHQGNNEV 60 PKVADFLGVS KSESPSDLVA FNEIQANDSD YLFSSNSLVP VQNAVVGANN TFEFQENASN 120 LQSLTLSMGS ASCKGSTCEP SGDSSTNTVE AAAPRRTLDT FGQRTSIYRG VTRHRWTGRY 180 EAHLWDNSCR REGQSRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGTSTTT NFPISNYEKE 240 IEEMKHMTRQ EFVASIRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF 300 STEEEAAEAY DIAAIKFRGL NAVTNFDMNR YDVKSILESN TLPIGGGAAK RLKEAQAIES 360 SRKREEMIAL GSSFPYGSSS SSSRLQAYSL MQTPFEQPQP LLTLQNQDIP QYTQDSSLHQ 420 NFLQTQLHLH QQSTGSNFLQ NQSSQNPQYY NSYIQNNPAL LYGLWNMGSS SSVMENNGSS 480 SGSYSTGGYV GNGLGIASNS AGSNAVGSAE ELALVKVDYD MPSSGYGSWS GDSVQGSNPG 540 VFTMWNE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0009s0500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216409 | 1e-170 | AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042075.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2K2BA87 | 0.0 | A0A2K2BA87_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s20470.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4942 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0009s0500.1.p |