PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0009s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 400aa MW: 44263 Da PI: 10.8641 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.3e-05 | 288 | 310 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y Cp+C+k++ + ++ H+ tH SapurV1A.0009s0030.1.p 288 YICPKCKKVCEVSQTFAAHMLTH 310 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.42E-5 | 277 | 311 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 290 | 310 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MANNNFNVSS GSIVHENLSL GSNFAQNHVN GQGRIIPQSL APTIGVQPSN LFVPQRGPGQ 60 IALGRRLSGV RRTQISPLIR ARIHTIVEYL PAEQNQIEAL PLHPASGYTV TEIPRTTGRF 120 LPSPAPGELL LAPNHNNVHL QSLNPNNDVR FQGQPNFPNH NLTMFNQVNH RNAYRPYGPQ 180 TRQMINFMNL DHRNHSHGND DGVVVNPKPL SVYGPAGISR AQNPSPNRGL NQNPETSQLG 240 VDRVRINPRD EARDIPTNQS STSSGNEQKM DLGDGVTHSL PHKKYGPYIC PKCKKVCEVS 300 QTFAAHMLTH YRVENKEQRK RRLAAKNKKK NLHQIHSRGN GLTISPVGTK SKVPLKVYVR 360 RKKAAGGKAE MATSKRVVED KVQEGRGNTV FDEAYGLKW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 324 | 330 | AKNKKKN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00264 | DAP | Transfer from AT2G15740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0009s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025400.1 | 0.0 | PREDICTED: uncharacterized protein LOC105126279 | ||||
TrEMBL | B9GYK7 | 0.0 | B9GYK7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s21710.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18940 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18490.1 | 5e-15 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0009s0030.1.p |