PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0008s0970.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 21317.6 Da PI: 10.2215 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+ksF++ L H +H SapurV1A.0008s0970.1.p 49 FSCKTCDKSFPSFQALGGHRASH 71 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00048 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F+ L H+r+H SapurV1A.0008s0970.1.p 96 HRCSICGLEFPLGQALGGHMRRH 118 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.63E-9 | 47 | 118 | No hit | No description |
Pfam | PF13912 | 9.7E-12 | 49 | 73 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.084 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.201 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.4E-10 | 95 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.088 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.767 | 96 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MKRDREEAEL ELARYLVLLS KFGKADHEIL TNYRSPPPPP PPAAAGRLFS CKTCDKSFPS 60 FQALGGHRAS HKKSKLMEST GNFSKLPDSP SKPKTHRCSI CGLEFPLGQA LGGHMRRHRA 120 APNNVDTAST ASKDHESVAV TQPPFLPALP VLKRSNSSKR VLSLDLSLAL PMYQNDSELQ 180 MEKVTRPLLK CFI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0008s0970.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000297.1 | 1e-107 | PREDICTED: zinc finger protein ZAT11 | ||||
TrEMBL | A0A2I4KKH6 | 1e-104 | A0A2I4KKH6_POPTR; C2H2 family protein | ||||
STRING | POPTR_0001s24250.1 | 1e-103 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 5e-33 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0008s0970.1.p |