PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0008s0940.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27442.7 Da PI: 7.3709 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.8e-18 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+llv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl SapurV1A.0008s0940.1.p 8 KGPWTEKEDLLLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5e-17 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+ l +++++++G++ W++Iar ++ gRt++++k++w+++ SapurV1A.0008s0940.1.p 61 RGKMTPQEERLVLELHAKWGNR-WSRIARSLP-GRTDNEIKNYWRTH 105 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.53 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.75E-30 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-16 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-21 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.08E-12 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.698 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-16 | 61 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.78E-12 | 63 | 105 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MMQDEIRKGP WTEKEDLLLV NFVHLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGKMTPQEER LVLELHAKWG NRWSRIARSL PGRTDNEIKN YWRTHTRKKA QERNRAMSPS 120 LSSSNCSSSS NTTTVNSSPP PRTGETSFYD TGGLEQVALA GKNGEAVQGG GKGYSMDDFW 180 KDIENTIEPL CDGFSEEGCK FSCPSLASPS WEYCSYTLWS FGDDEEGKIF LPYDEGTTFL 240 TG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-27 | 1 | 110 | 51 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-27 | 1 | 110 | 51 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0008s0940.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034651 | 9e-43 | KM034651.1 Jatropha curcas clone JcMYB031 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000301.1 | 1e-146 | PREDICTED: transcription factor MYB59 isoform X2 | ||||
Swissprot | Q9LX82 | 2e-92 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | B9GES4 | 1e-142 | B9GES4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s24220.1 | 1e-143 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 1e-91 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0008s0940.1.p |
Publications ? help Back to Top | |||
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