PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0008s0620.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 409aa    MW: 45679 Da    PI: 9.613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0008s0620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001351371223
                             EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             +C+ CgksF r++ L++H++++
  SapurV1A.0008s0620.1.p 351 TCSQCGKSF-RPERLHSHMKSC 371
                             6********.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061362.7E-3924234IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEVSSGIPKS CSSSGAGAGE VRRVHIIYFL SHNLGCIEHP HLIRVLHFHR NGVYLRDVKR  60
WLADLRGKEM PKAFAWSYKR RYKKGYVWQD LIDDDLITPI SDNEYVLKGS EISLSPPFVG  120
SAYGEKRENN GVELVENKAQ NHELRPSPDR ISRDTTSRNK SSPEISKESP SFSSEISSVT  180
DDSIKDEEDD SCKSHNSLDQ EQLVDNKAQH SSFYTSFLGR SKKNQEKRKD STSSIEKSRS  240
YSSGTSKALR NFITCGAVDT NDAALVLQSQ KSRNKYMPID KPAGHICKGE ELGGSARVFG  300
TPWNQEQQQR QHNIANARKS FDGVKASKKQ HNGFGSRKVV YPAYKPLAVP TCSQCGKSFR  360
PERLHSHMKS CRGFKVLTKA ASTYFEKSPS PSHNSADSAS EDGYFLTI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0008s0620.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369486.10.0uncharacterized protein LOC18095011 isoform X2
TrEMBLA0A3N7EDR30.0A0A3N7EDR3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83781620