PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0008s0360.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 276aa    MW: 30595.3 Da    PI: 10.362
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0008s0360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like986.8e-31203257155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             k r+rWt +LH+rFve v++LGG++kAtPk il+ m+v+gLt+ hvkSHLQkYR 
  SapurV1A.0008s0360.1.p 203 KRRVRWTRDLHKRFVESVNRLGGAQKATPKGILKEMDVHGLTIFHVKSHLQKYRA 257
                             68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.636200260IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-28201258IPR009057Homeodomain-like
SuperFamilySSF466892.69E-16202256IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-24203257IPR006447Myb domain, plants
PfamPF002494.0E-7205256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MASSWNVGFR FLSNLQEGSI PKFNPGTSDQ QIPSEPIISG HFASSAPAPY APEGCKGLSY  60
DHTSSLSACS PVGKTPYSAA NPQNYILDHK SSLNLINSQN NQDPRSPGNT RQDLCRNLQR  120
KGLLPPILQR PASKLAGLNR RQIHVDNSFK DHQNHAVACH SFSSQFTKPN SSFQQQKQPE  180
NSPDDKISGT NNPVSSGATI ESKRRVRWTR DLHKRFVESV NRLGGAQKAT PKGILKEMDV  240
HGLTIFHVKS HLQKYRAERY LSESKEGIFP WKLLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-22203260259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-22203260259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-22203260158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-22203260158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-22203260158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-22203260158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-22203260259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-22203260259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-22203260259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-22203260259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-22203260259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-22203260259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0008s0360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369451.21e-119myb family transcription factor PHL5 isoform X3
RefseqXP_024448741.11e-119myb family transcription factor PHL5 isoform X2
TrEMBLA0A3N7EBF71e-118A0A3N7EBF7_POPTR; Uncharacterized protein
TrEMBLA0A3N7FU151e-117A0A3N7FU15_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23560.11e-122(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1787557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.25e-30G2-like family protein