PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0008s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 503aa    MW: 55323 Da    PI: 8.1
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0008s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-05146167223
                             EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             +C  Cgk+F++  +L  H+r H
  SapurV1A.0008s0060.1.p 146 TCCLCGKVFPSMNSLFGHMRFH 167
                             6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.7876996IPR007087Zinc finger, C2H2
SMARTSM003555.66991IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-96993IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM003550.088145167IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432145167IPR007087Zinc finger, C2H2
SuperFamilySSF576679.48E-9146167No hitNo description
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
PfamPF139121.0E-4147168IPR007087Zinc finger, C2H2
SuperFamilySSF576679.48E-9418445No hitNo description
PROSITE profilePS5015710.138423445IPR007087Zinc finger, C2H2
SMARTSM003550.13423445IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-13423447IPR007087Zinc finger, C2H2
PROSITE patternPS000280425445IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDDHEREFLQ RDDHYPAKVS ADKPVASLPL DPLASRSKFS FKIKIANSSK PSGDDREGAA  60
ADPRGPGYRV CEYCGKEFSS GKAWGGHKRH HLKNDKDLKK ARQLELTKIQ REKTKKHELK  120
SSKSNGSRCN TIKAGDVSVA SGGKPTCCLC GKVFPSMNSL FGHMRFHPDR GWKGTQPPSL  180
SDKHSRNSSS LSESAAVLEV DQIGLAMERG LDDGVDLLAS LSSWNKRDKR GRTLDPVEAV  240
CDLDSVQAAC NLIELSRDGS RFHKQKIDEV RQRKKLKIND ESTTCKSLKP KNSGKPVDEF  300
KLQIGMDDQK AVSFDSELGV SRWSNEDKGK RKRDSDEQED ESHSMITKKK KKKTMMMNWM  360
CKLNDSETSK GTGSYKIASG DGAEPLDYKS TMDAKGHVLS SMEVLQSEEI EEESSIPMGI  420
SSFECDKCHK TFPTGQALGG HKRCHWKGPA KATPSHEVAL PGEASQNTSN SESSGEANQA  480
GEASACSLSF DLNIPYIMED GE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330352RKRDSDEQEDESHSMITKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0008s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298148.30.0uncharacterized protein LOC7486650
TrEMBLA0A2K2C1Y60.0A0A2K2C1Y6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-17C2H2 family protein