PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0007s0250.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 29270.3 Da PI: 7.4983 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H SapurV1A.0007s0250.1.p 98 FECQYCFKEFANSQALGGHQNAH 120 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 94 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.56E-6 | 95 | 125 | No hit | No description |
PROSITE profile | PS50157 | 11.24 | 98 | 125 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 100 | 120 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MEKEGSNMFS SVLDGDQNGH SAHESCTVEK KLIKLFGFEL NPCKNSKSCI KRCVEGDHES 60 VNSSNSTVVS SERDQKPVKE KSSSSGHHLG PADDHKKFEC QYCFKEFANS QALGGHQNAH 120 KKERLKKKRL QIQARKASLS CYLQPYQNNL SYSSQYETSA TPWFFDPSCS AAPDQFTLYE 180 ESQISFNPYE DSHFNDSQIS NWHAVPAQVI PFEQDSRYKF TSTRDDQRSR DYKPSPLLGS 240 KKNCKSVDLQ LDLSLQSN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0007s0250.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006378183.1 | 1e-148 | zinc finger protein 5 | ||||
TrEMBL | U5FXW8 | 1e-147 | U5FXW8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s04580.1 | 1e-147 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9594 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10480.1 | 3e-18 | zinc finger protein 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0007s0250.1.p |