PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0006s1530.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 343aa    MW: 39011.7 Da    PI: 4.853
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0006s1530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.4e-34461372102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k++++++d+ +++++sws+ g sfvv+d+++f+ ++Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +
  SapurV1A.0006s1530.1.p  46 FLTKTFDMVDDPMTNHIVSWSRGGFSFVVWDPDSFSINILPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLR 123
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+k+ l++ikrkk 
  SapurV1A.0006s1530.1.p 124 GQKQFLRNIKRKKA 137
                             ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-5642135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.0E-3742135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-3442135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.0E-3046135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNPYLTVKQE CAGSSLLPLS GGDEPPVVML PPQPMEGLHD TGPPPFLTKT FDMVDDPMTN  60
HIVSWSRGGF SFVVWDPDSF SINILPRFFK HNNFSSFVRQ LNTYGFRKID PDRWEFANEG  120
FLRGQKQFLR NIKRKKAASQ PLSQQQAPDA RFEVSRFGLD GEIDLLKRDR QVLVMELQRL  180
QGTEQRQQQM MQFLARAMQN PAFLQQLVQQ NGETKELEEA MTKKRRRLVD QRPGRSGGGG  240
ESSRIDESAN PIKAEPLEYG DHGFEVSELE ALALEMQGHG RARRKQEDGV EEIGSPESGD  300
RELDEGFWEE LLNESVRGGE DEDVNTLAER LNYLYSSPTY RN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-254413527129Heat shock factor protein 1
5d5v_B7e-254413527129Heat shock factor protein 1
5d5v_D7e-254413527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223227KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0006s1530.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139880.0KP013988.1 Populus simonii heat shock transcription factor A7a2 (HsfA7a2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450269.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-103HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0N7DK100.0A0A0N7DK10_9ROSI; Heat shock transcription factor A7a2
TrEMBLB9GSI70.0B9GSI7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.18e-87heat shock transcription factor A6B