PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0006s1510.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 472aa    MW: 51862.3 Da    PI: 9.4251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0006s1510.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0579101123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C+k F r  nL+ H r H
  SapurV1A.0006s1510.1.p  79 FVCEICNKGFQRDQNLQLHRRGH 101
                             89*******************88 PP
2zf-C2H212.30.00053155177123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC++C+k +  +s+ k H +t+
  SapurV1A.0006s1510.1.p 155 WKCEKCSKIYAVQSDWKAHSKTC 177
                             58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.18E-678101No hitNo description
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
PfamPF121717.4E-579101IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355260120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.18E-6150175No hitNo description
SMARTSM00355170155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MFPAAMSNST SLSEEASVSS CTRVQDFGRL NQLASTIYPL QQQQQQKIIK KKRSLPGNPD  60
PDAEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NSKEIKKKAY  120
VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRKDSFITHR AFCDALAEES ARFSAHQLII SQNSNAHALL LQNPLQTHPH  240
SLFSTPTHHQ ISFTSPWGPP RHQNPSSNNP HNTVHIKPET TGHFQIPASL LQEPPLTMPN  300
HKGLLAPTFQ SLSNASASPA ASHHLSATAL LQKAASVGAT QTSAGHSHMT PLDMGELGSA  360
GQVHVNSVSH VSQGLNYNLS SLATWQKSDR LTRDFLGLTA PECGDHRGHA ASNANGSSGG  420
VNVSMDMREI LNYTGGVGFH QQQYNEREHS LLKPHGGFGF AQPSASEAWG D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-36151215367Zinc finger protein JACKDAW
5b3h_F4e-36151215367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0006s1510.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-126AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026098.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotO227591e-126IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLB9GSI60.0B9GSI6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-116indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]