PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0006s1160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 352aa MW: 38939.2 Da PI: 10.2574 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 7.2e-32 | 285 | 342 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ SapurV1A.0006s1160.1.p 285 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 342 99***********************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.8E-18 | 236 | 281 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-34 | 271 | 343 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.641 | 278 | 344 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.06E-27 | 281 | 343 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-39 | 283 | 343 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-27 | 285 | 342 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MEGVEEANRA AVESCHRAIS LLSQPQDQVQ YRNLMVETGE AVFRFKKVVS LLNTGLGHAR 60 VRKLKKLPTH LSQSILLDNP LNRIGHSSKT PQFLQSSSYL ESQPIQELGS SAKNCLSLGT 120 PSLEMSSAGK NPLQLGQPTS AATYQLLQLQ QQQLHRLQLQ QQQQQQLQMK QQAEMMFRKN 180 NSGISLNFDS SSCTPTSTRS FISSLSIDGS VANLEGSAFH LMGAARSSDQ SSQQHKRKCS 240 GRGEDGSVKC GSSGRCHCSK KRKHRVKRSI KVPAISTKLA DIPPDDYSWR KYGQKPIKGS 300 PHPRGYYKCS SMRGCPARKH VERCLEDPSM LIVTYEGEHN HPRIPVQSAN T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-21 | 279 | 345 | 10 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0006s1160.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT029779 | 0.0 | CT029779.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302070.2 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-125 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | B9GS59 | 0.0 | B9GS59_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04440.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 1e-101 | WRKY DNA-binding protein 39 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0006s1160.1.p |