PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0006s0970.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24605.3 Da PI: 6.0597 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.3 | 3.6e-40 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+++Cv+apyf++eq +++f ++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq SapurV1A.0006s0970.1.p 7 PCGACKFLRRKCVRGCVFAPYFCHEQgAQHFSAIHKVFGASNVSKLLAHLPVSDRSEAAVTISYEAQARLQDPIYGCVSHIFALQQQ 93 7*************************89*********************************************************** PP DUF260 87 leqlkaelallkee 100 + +l+a+la+lke+ SapurV1A.0006s0970.1.p 94 VVNLQAQLASLKEQ 107 *********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.489 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-38 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAQHFSAI HKVFGASNVS KLLAHLPVSD 60 RSEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASLKEQATQ SFLNGSATTN 120 PNDKLYGKPS YPLDLQSWFQ SENSSTVPQL NPNNLTNNMP YCENGIMDPN SMGNYGNSTS 180 SFDSFEEASH SMSSFDMQTD NLQWTYQHAD DLQSMAFGYT QHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-37 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-37 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0006s0970.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002300786.2 | 1e-155 | LOB domain-containing protein 29 | ||||
Refseq | XP_011028777.1 | 1e-155 | PREDICTED: LOB domain-containing protein 29 | ||||
Refseq | XP_024450980.1 | 1e-155 | LOB domain-containing protein 29 | ||||
Swissprot | Q9M2J7 | 1e-67 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
Swissprot | Q9SLB6 | 1e-67 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | B9GS34 | 1e-154 | B9GS34_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04200.1 | 1e-154 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 6e-60 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0006s0970.1.p |
Publications ? help Back to Top | |||
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