PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0006s0130.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 708aa MW: 77995.6 Da PI: 6.0249 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 450 | 487 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +e++ LA++ gLt +qV +WF N R + SapurV1A.0006s0130.2.p 450 FEHflHPYPSDSEKTMLASQAGLTRSQVANWFINARVR 487 664459******************************88 PP | |||||||
2 | BELL | 123.1 | 1.1e-39 | 314 | 385 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+kk+kLls+leeVd++Ykqy++q+q+v+ sF++vag+g+ak+Yt+lAl++iSrhFrcL+dai++qi SapurV1A.0006s0130.2.p 314 ERQDLQNKKTKLLSMLEEVDRKYKQYYHQMQAVALSFDMVAGHGAAKSYTELALQTISRHFRCLRDAISGQI 385 799********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-63 | 235 | 383 | IPR006563 | POX domain |
Pfam | PF07526 | 1.5E-47 | 241 | 382 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.552 | 428 | 491 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 431 | 495 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.79E-12 | 431 | 492 | No hit | No description |
SuperFamily | SSF46689 | 1.97E-16 | 432 | 498 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-27 | 434 | 497 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.0E-17 | 448 | 487 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 708 aa Download sequence Send to blast |
MATYYRTSSS QNSNLQTLFT GDQKGASYSE LPSDLSSMKS YTSHTPAAGS YSEILYGGSL 60 SSQNGAEFSS CGARDEIAFI PPTSDTMNLQ SAGGQLNTAA GNLVGDSVSG NSQAVPPWMQ 120 LGIPDCEQNF HSQGLPLRLG MQEQSAVSMP SLQYDQYPNR NFPSSLCSNL LVPEKWTLTC 180 EGDESNQRNE LREFEGLSGF AGSNHNPIKT ESPHNPQYIV GLGDMPADMN MYGLAGYANT 240 LLNSRYLKSV QHLLDEMINV KKALKQPQSN KCSGDNKEND RRPSPCSMLP SSNEKPSDPT 300 ESTAESTPGL SPVERQDLQN KKTKLLSMLE EVDRKYKQYY HQMQAVALSF DMVAGHGAAK 360 SYTELALQTI SRHFRCLRDA ISGQIEVIMK RLGEQGNSTN GQGGIPRLRY VDHQTRQQRA 420 LQQLGVMRHA WRPQRGLPES SVSVLRAWLF EHFLHPYPSD SEKTMLASQA GLTRSQVANW 480 FINARVRLWK PMVEDMYKEE FGDSDTNSKS SLDETTKSRG DKSDNLLTSE NRLRELYESV 540 TSAGADIAQP GKSHDIKSNH ILELEMKEPL AKIVLENGSQ GPNVAESDIM KFPRDRSLNI 600 DDDHNFCPRD NMPCDQNGDG NPMSAAAAAA YDVSHLKGFA AGSQMSLALG LQSNDSDSFP 660 TFDGAHMRGK NTSASSVGHD EVDHHCMDTG KQHDRIVNSH RLHDFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 3e-16 | 437 | 494 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-16 | 437 | 494 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0006s0130.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302014.3 | 0.0 | BEL1-like homeodomain protein 7 isoform X1 | ||||
Refseq | XP_024450352.1 | 0.0 | BEL1-like homeodomain protein 7 isoform X1 | ||||
TrEMBL | A0A2K2BCN5 | 0.0 | A0A2K2BCN5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s03240.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-109 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0006s0130.2.p |