PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0005s0700.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-PHD
Protein Properties Length: 884aa    MW: 97390 Da    PI: 4.9165
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0005s0700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.67.9e-127928341052
                             HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                               ++ L ++F++n+yp++++++ LA++lg+t +qV  WF N R
  SapurV1A.0005s0700.3.p 792 AVTQKLYSFFKENQYPDQAAKTSLAEELGITFEQVNKWFMNAR 834
                             56899************************************99 PP
2PHD39.21.6e-13424479151
                             SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                     PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                             +C+ Cg+  ++++++++lCdg C++ fH+ Cl ++l +ee+p g   wlC+ C++k
  SapurV1A.0005s0700.3.p 424 FCAKCGSkdWTADNDIILCDGaCDRGFHQFCLVPPLLREEIPPGdeGWLCPGCDCK 479
                             699***988788********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.97E-14414482IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.108.7E-13420479IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.887422479IPR019787Zinc finger, PHD-finger
PfamPF006283.4E-11424479IPR019787Zinc finger, PHD-finger
CDDcd155042.71E-26424476No hitNo description
SMARTSM002492.5E-9424477IPR001965Zinc finger, PHD-type
PROSITE patternPS013590425476IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.606.0E-13774834IPR009057Homeodomain-like
SuperFamilySSF466891.84E-11776837IPR009057Homeodomain-like
CDDcd000864.34E-11779834No hitNo description
PROSITE profilePS5007111.936780840IPR001356Homeobox domain
SMARTSM003892.0E-10782844IPR001356Homeobox domain
PfamPF000462.4E-9792834IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MSKAEHMGIS PSKVSSHTKT YSCPTQTTLE NTHESSVEYK LGGYSEDRHK LECEIIQAEA  60
EDSRATVLHS GSGETEHPST DDVTKSSLLD LDPPPEDVRT VPFDNCAGPM STDMDQKLKP  120
GAPSVNTACE HSESSKAIDS SILLDESRNS SKKLSSCIAN ETSQASLEDI ANDSCAEEAG  180
LSLVEASISE LIYESSNSQQ TTSGQTLEFV TKSCPIKHID LPPGDDISIP ANEQIRPSHD  240
NESKHSDCHL EKLTGLVIGV TNQGRPSVKR TLKLSRKKYT SSSRKSDRVL RSKSQEKPKA  300
PELSNNSTNG NSTDEKKGKR KKKRRGKSIV ADEYSRIRAR LRYLLNRMSY ERSLITAYSG  360
EGWKGLSLEK LKPEKELQRA TSEIIRHKVK IRDLFQHIDS LCGEGRFPAS LFDSEGQIDS  420
EDIFCAKCGS KDWTADNDII LCDGACDRGF HQFCLVPPLL REEIPPGDEG WLCPGCDCKV  480
DCIELLNDSQ GTNISISDSW ENVFPEAAAA VSGQKLDYNF GLSSDDSDDN DYDPDGPDID  540
EKSQEESSSD ESDFSSASEE FEAPPDDKQY LGLPSDDSED DDYDPDAPVL EEKLKQESSS  600
SDFTSDSEDL AAILNGDGLS LGDEYLMPIK PHDDSNGRRL ISGGKKNRSL NSNLLSMLEP  660
DSRQDKSAVI SGKRNIERLD YKKLYDETYG NISTSSDDDY NVTVAPRKRR KNTGDVAMVI  720
ANGDASVTGN GMNNKNMNHE LKKNEHTSER ISQKSSFQDT TVSPAKTHVG DICSGSSSKR  780
ARPSPYKKLG EAVTQKLYSF FKENQYPDQA AKTSLAEELG ITFEQVNKWF MNARWSFNHS  840
SPEGTSKAES ASGKGSCDGH LRDSESKNQK RNKQKTSTPK SRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315323KKGKRKKKR
2318324KRKKKRR
3320324KKKRR
4321326KKRRGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0005s0700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300247.30.0homeobox protein HAT3.1
RefseqXP_024444572.10.0homeobox protein HAT3.1
RefseqXP_024444577.10.0homeobox protein HAT3.1
TrEMBLA0A2K2C5U30.0A0A2K2C5U3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30570.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.19e-87Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain