PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0005s0340.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 377aa MW: 42634.2 Da PI: 5.0828 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 120.6 | 8.3e-38 | 152 | 247 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 lfqrlw+e+Dei+lL G+idf++k+g +ps+d++afy+f+kks++f+vs +ql +Ki rLKkKf+++vk k+g++++fsk+hdqk SapurV1A.0005s0340.1.p 152 LFQRLWTEDDEIALLLGIIDFTEKKGYDPSKDMNAFYDFIKKSLHFDVSMTQLKDKISRLKKKFENHVKG-KKGENKTFSKPHDQKG 237 79******************************************************************99.99************** PP DUF573 89 felskkiWgs 98 f+lsk+iWgs SapurV1A.0005s0340.1.p 238 FDLSKSIWGS 247 ********95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.9E-34 | 153 | 246 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 377 aa Download sequence Send to blast |
MAPKRPPPVE DPPSASISEE EEEEEESSSA TEDEEEHSEG EQSQPSPQQT QNKTQNPPLK 60 ITETTTQQTE SDTDSESESE SDQIVKPITS KPMDQTPPKA ASASTASKKS RSKPATLEKT 120 SALKRYNETD REDSKRAKNK ESEKPEDSKK QLFQRLWTED DEIALLLGII DFTEKKGYDP 180 SKDMNAFYDF IKKSLHFDVS MTQLKDKISR LKKKFENHVK GKKGENKTFS KPHDQKGFDL 240 SKSIWGSEGS IKANGRKYES GNTLNNNNKT GNGKQLEASN PELGMDVREE DRVEVEMGRG 300 SSVKSVLKFD SSVSVGRMED YVVRMGLNFV HGTEKEKMEE EWRKLHVAEL ELFLKRNELI 360 REQANLMLAS FKTEKD* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0005s0340.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002300270.1 | 0.0 | GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | A0A3N7EK52 | 0.0 | A0A3N7EK52_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s30110.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25210.1 | 1e-36 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0005s0340.1.p |