PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0004s0240.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 593aa MW: 64443.6 Da PI: 7.8489 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.5 | 5.7e-24 | 216 | 260 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++ +k+CErH++rgr+rsrk++e SapurV1A.0004s0240.1.p 216 DPEPGRCRRTDGKKWRCSRDAVAEQKYCERHMNRGRHRSRKPVEG 260 79****************************************985 PP | |||||||
2 | QLQ | 59.3 | 1.1e-20 | 147 | 182 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+++L++Q+l+yKy+ an+P+P++Ll +i++ SapurV1A.0004s0240.1.p 147 PFTQSQWMELEHQALIYKYITANVPIPSNLLIPIRN 182 8*********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.2E-11 | 146 | 182 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.2E-15 | 147 | 181 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.719 | 147 | 182 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.01 | 216 | 260 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.0E-20 | 217 | 259 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 593 aa Download sequence Send to blast |
MDFGVQVGLD GLVGSDTSNN GFASLASSDP GAKQKYGSGL LKQERSAAAD DDWNNSKLSR 60 TESMLLDQRN ALLMKSNNSL FTDGQQQQQM LSFSCPKSAS SVARSSSNAI LPYFHLTSSA 120 YNRNTGYNPG IFNAASMHGV LTETGWPFTQ SQWMELEHQA LIYKYITANV PIPSNLLIPI 180 RNALDSAGFS SFSGGHFKPS ALKWGTFHMG FSSNTDPEPG RCRRTDGKKW RCSRDAVAEQ 240 KYCERHMNRG RHRSRKPVEG QPGHSAAATT TIKTMPNGTF SSTSTSVVGL CSAVSDSHTI 300 VHNLQQPASS SNISATDTLS RVFLTTENVG ERMQDVSGLS MLPSSIDLQS KETPFFISKQ 360 LKSYGESLRN EFARKSSSLM SCRNFGLSQN LTEQESVSQH SLRQFMDDWP KSHSDRSAVS 420 WPEPDMHYER AQLSISTPMA PADFMPSTSS PNNEKTTLPQ LRLSREFDPI QMGLGVGVGS 480 IANEPNQRQA NWIPISWETS MGGPLEEVLH STNYNATAEC KNASSLNLMT ERWDNSPRAG 540 SSPTGVLQKS AFASLSNSSA GSSPRAENKI NGGNLCHDLG STIVHSSSLS AL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0004s0240.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF042296 | 6e-58 | KF042296.1 Codiaeum variegatum GRF2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301140.3 | 0.0 | LOW QUALITY PROTEIN: growth-regulating factor 1 | ||||
TrEMBL | A0A2K1XNU7 | 0.0 | A0A2K1XNU7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s11590.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2085 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22840.1 | 3e-89 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0004s0240.1.p |