PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0003s1010.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARF | ||||||||
Protein Properties | Length: 673aa MW: 74844.6 Da PI: 6.4146 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68 | 1.4e-21 | 116 | 206 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +k+a+e+ + + +l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + SapurV1A.0003s1010.7.p 116 FCKILTASDTSTHGGFSVLRKHATECL-P---PLELAARDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RG 196 99************************4.4...247************************************************..34 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 +++el+v+v+ SapurV1A.0003s1010.7.p 197 DNGELRVGVR 206 8888999986 PP | |||||||
2 | Auxin_resp | 93.9 | 2.6e-31 | 233 | 312 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t++ F v+Y+Pr+ ++++ ++k+++a+k+ +svGmRfkm+fe+eds+err++Gt+vg+ d++p +W++S WrsLk SapurV1A.0003s1010.7.p 233 ASHAVLTQTLFVVYYKPRT--NQYIIGLNKYLEAVKNGFSVGMRFKMRFEGEDSPERRFTGTIVGIGDISP-EWSGSIWRSLK 312 68999*************6..99**********************************************99.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-35 | 107 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-34 | 110 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.19E-19 | 114 | 207 | No hit | No description |
SMART | SM01019 | 1.8E-20 | 116 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-20 | 116 | 206 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.884 | 116 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-29 | 233 | 312 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.2E-7 | 536 | 593 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.11E-11 | 552 | 633 | No hit | No description |
PROSITE profile | PS51745 | 25.528 | 557 | 638 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MAHVERGCDD LYTELWKACA GPLVDVPKAG ERVFYFPQGH MEQLEASTNQ ELNQQIPRFN 60 LPPKILCRVI NIQLLAEQDT DEVYAQIALH PEADQTEPTS PDPCPPEPEK QTIHSFCKIL 120 TASDTSTHGG FSVLRKHATE CLPPLELAAR DLHGFEWRFK HIFRGQPRRH LLTTGWSTFV 180 TSKRLVAGDA FVFLRGDNGE LRVGVRCLAR QQSSIPSSVI SSQSMHLGVL ATASHAVLTQ 240 TLFVVYYKPR TNQYIIGLNK YLEAVKNGFS VGMRFKMRFE GEDSPERRFT GTIVGIGDIS 300 PEWSGSIWRS LKIQWDEPAT IQRPERVSPW DIEPFAAPAS PNLTQQVVKN KRPRPTDIPT 360 SAASSFWYHG STQSHELAQL GCSTEVQSSE SHVWSMRQKE IDSNLLNNSS SCNTRARPEG 420 MWPSSPHMNV SLNFFPDSAG DNDFATTRSI ISGFSSPMSS RQSNCLISEQ VEKGRKYENS 480 AGCRLFGIDL TSNSGSSAPP EKEPAYPITK VLVPAASEAE RAQTMDVSMY SKEQKQVLSE 540 ALLKESRSKQ GSATSTRTCT KVQMQGIAVG RALDLTALKG YMDLINELEK MFEIEGELST 600 PKKWAVVFTD DEGDMMLLGD DPWLEFCKMV KKIFIYSSDE VKKTGTRCKL SASSFEGEGT 660 VVSMDSEHRS DA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-167 | 9 | 335 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-167 | 9 | 335 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-167 | 9 | 335 | 17 | 355 | Auxin response factor 1 |
4ldx_A | 1e-167 | 9 | 335 | 17 | 355 | Auxin response factor 1 |
4ldx_B | 1e-167 | 9 | 335 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 350 | 354 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0003s1010.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT164698 | 0.0 | KT164698.1 Populus tomentosa clone Potom.002G07206 auxin response factor 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024451070.1 | 0.0 | auxin response factor 18 isoform X3 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A2K2BK81 | 0.0 | A0A2K2BK81_POPTR; Auxin response factor | ||||
STRING | POPTR_0002s17350.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0003s1010.7.p |
Publications ? help Back to Top | |||
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