PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s0650.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 189aa    MW: 21029.3 Da    PI: 10.9689
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s0650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.2e-11103145345
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             +WT +E+e+l+ + +++G g+  +I+r++ k++ l q+k++ +
  SapurV1A.0003s0650.1.p 103 AWTDQEHEQLLMGLRKYGAGNYGKISRKFVKTKNLQQVKNHAN 145
                             7****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.83199153IPR017884SANT domain
SMARTSM007175.7E-7100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-8102143IPR009057Homeodomain-like
CDDcd001677.22E-8103148No hitNo description
PfamPF002493.3E-7103145IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-9104149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MENQLGASKS LLSPPKPKHK RIRLGPPPPP PSKISIKGPH LPMIADNIPC PRGTKPMRRP  60
NGNGKDKNTD LDMRREMEND EKIIRQGVKE LVQEYYKKNP GEAWTDQEHE QLLMGLRKYG  120
AGNYGKISRK FVKTKNLQQV KNHANLVFQI SGQLLRFSTR KGPNTKVGIA KPNPAAANVV  180
EAHSRSSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0003s0650.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023465.17e-47PREDICTED: transcription factor MYB1R1-like
TrEMBLA0A2K2BKE42e-86A0A2K2BKE4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17760.12e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2821333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-11MYB family protein