PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s0340.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 413aa    MW: 46743.1 Da    PI: 7.8342
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s0340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.78.2e-32115219199
                             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+
  SapurV1A.0003s0340.1.p 115 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQ 201
                             89****************************66677899************************************************* PP

                             E-.SS.SEE..EEEEE-S CS
                      B3  84 ld.gr.sefelvvkvfrk 99 
                             +  g+  + +l++ ++r+
  SapurV1A.0003s0340.1.p 202 RGvGEsGKHRLFIDWRRR 219
                             665777888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-43106224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-30112220IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-26113214No hitNo description
PfamPF023622.5E-29115219IPR003340B3 DNA binding domain
PROSITE profilePS5086314.79115220IPR003340B3 DNA binding domain
SMARTSM010192.3E-22115220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MNFVEGERRD FDKEELGQEK QEGEVVMASK LLFSSPCTPS SSTKYTNFLP GNQNLWPGSF  60
DQSQQDSETQ LPSLSFDKKL ELMELSLGNN NEADQSTSAG AVGGASESIE REHMFDKVVT  120
PSDVGKLNRL VIPKQHAERY FPLDSSSNEK GLLLNFEDRN GKPWRFRYSY WNSSQSYVMT  180
KGWSRFVKEK RLDAGDIVSF QRGVGESGKH RLFIDWRRRP NAPDPTTFSH LELQNQQHFP  240
QSVRWGRLYS MPRSNVSMQQ PQLRHLNYSI HPYQQQAHQN RNHQNHCHQP ATLRYGNSEQ  300
YYLRSPETLQ IAAMHREAGG SHVPLVIDSV PVVHGETVGK RLRLFGVSMD CPTQDHDQSS  360
SITMTHGTMG SFSPHLASSS LPPLQLRVPT SAPMQAEFSK KGKTSLSFDL DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-671102223116B3 domain-containing transcription factor NGA1
5os9_B3e-671102223116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0003s0340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386670.10.0B3 domain-containing transcription factor NGA1
RefseqXP_024451854.10.0B3 domain-containing transcription factor NGA1
RefseqXP_024451855.10.0B3 domain-containing transcription factor NGA1
RefseqXP_024451856.10.0B3 domain-containing transcription factor NGA1
RefseqXP_024451857.10.0B3 domain-containing transcription factor NGA1
RefseqXP_024451858.10.0B3 domain-containing transcription factor NGA1
RefseqXP_024451859.10.0B3 domain-containing transcription factor NGA1
RefseqXP_024451860.10.0B3 domain-containing transcription factor NGA1
RefseqXP_024451861.10.0B3 domain-containing transcription factor NGA1
RefseqXP_024451862.10.0B3 domain-containing transcription factor NGA1
RefseqXP_024451864.10.0B3 domain-containing transcription factor NGA1
SwissprotO827992e-91NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLU5GT980.0U5GT98_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-89B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]